RchiOBHm_Chr1g0379801

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
65723838 .. 65724564
727 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGGTTTTGCTTCCAACTGGAACTTTTAGCTCTGCGTTTACTGGAATGGCGCTTTCTTATGGTCTTTCATTAAACATGCCATTGATCTATTCAATTCAAAGCCAGTGCACTAGAGCAAATTACATAATTTCGGTTGAAAGACTAAATCAATACACACATGTACCAAGCGAAGCCCCTGAAGTTATAGAGGAACCGTCCACCTCCCAACTGGCCTGTTGTAGGAAAAGTGGAGATACAAAATTTGCAGATGAGATATAG

Protein Analysis

85

Amino Acids

9.32

Weight (kDa)

4.84

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 3 cut(s) 93, 98, 137
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 110
Alw44I GTGCAC 1 cut(s) 106
AoxI GGCC 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 106
ApoI RAATTY 1 cut(s) 239
AspLEI GCGC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 110
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
Bbv12I GWGCWC 1 cut(s) 110
BfaI CTAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 4 cut(s) 22, 46, 103, 213
BseLI CCNNNNNNNGG 1 cut(s) 219
BseNI ACTGG 4 cut(s) 22, 46, 103, 213
BseSI GKGCMC 1 cut(s) 110
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 219
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 84
BspANI GGCC 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 192
BsrI ACTGG 4 cut(s) 22, 46, 103, 213
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 195
BstENI CCTNNNNNAGG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstNSI RCATGY 2 cut(s) 79, 161
BstSLI GKGCMC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 110
CfoI GCGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 161
CviAII CATG 2 cut(s) 76, 158
CviJI RGCY 4 cut(s) 30, 102, 173, 212
CviKI_1 RGCY 4 cut(s) 30, 102, 173, 212
CviQI GTAC 1 cut(s) 161
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 217
FaeI CATG 2 cut(s) 79, 161
FaiI YATR 6 cut(s) 60, 77, 125, 159, 185, 256
FatI CATG 2 cut(s) 75, 157
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 212
HhaI GCGC 1 cut(s) 52
Hin1II CATG 2 cut(s) 79, 161
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
Hpy166II GTNNAC 3 cut(s) 39, 108, 198
Hpy8I GTNNAC 3 cut(s) 39, 108, 198
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 108, 245
Hsp92II CATG 2 cut(s) 79, 161
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 6 cut(s) 3, 27, 116, 189, 194, 226
MaeI CTAG 1 cut(s) 111
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 4 cut(s) 93, 118, 126, 239
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 2 cut(s) 181, 211
MseI TTAA 1 cut(s) 71
NdeII GATC 1 cut(s) 84
NlaIII CATG 2 cut(s) 79, 161
NlaIV GGNNCC 1 cut(s) 192
NspI RCATGY 2 cut(s) 79, 161
PciI ACATGT 1 cut(s) 157
PscI ACATGT 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 192
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 71
Sau3AI GATC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 110
SetI ASST 2 cut(s) 32, 203
Sse9I AATT 4 cut(s) 93, 118, 126, 239
SspMI CTAG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 195
TasI AATT 4 cut(s) 93, 118, 126, 239
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 1 cut(s) 110
VneI GTGCAC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 217
XapI RAATTY 1 cut(s) 239
XceI RCATGY 2 cut(s) 79, 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.