Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

66304858 .. 66309496

Gene Structure 4639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGAAGCACAATAATGTTATCCTTGGGGAGCACTTCAGGAAGCACCGGCAGAACAATGTCAAGACCTGGTTAAACGAACCAGCACCAGGCTTTCTTATATTGCTTCTTCCTAAAATCACAGCTCGCGGCAAAGCTGTGAAAATCTTTCCTAGGCCTACTGCTGGACCTCTCCTACCAGTTGTTCGTGACAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

65

Amino Acids

7.45

Weight (kDa)

11.73

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	7 - 62	1.5e-06	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	126
AciI	CCGC	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	86, 161
AjnI	CCWGG	2 cut(s)	65, 85
AluBI	AGCT	2 cut(s)	122, 134
AluI	AGCT	2 cut(s)	122, 134
Alw21I	GWGCWC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	152
AspA2I	CCTAGG	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	164
AvrII	CCTAGG	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	67, 87
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	127
BlnI	CCTAGG	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	67, 87
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmrFI	CCNGG	2 cut(s)	67, 87
BsaJI	CCNNGG	2 cut(s)	22, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 161
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	67, 87
BseDI	CCNNGG	2 cut(s)	22, 149
BseLI	CCNNNNNNNGG	2 cut(s)	86, 161
BseNI	ACTGG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	86, 161
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	22, 149
BssT1I	CCWWGG	2 cut(s)	22, 149
Bst2UI	CCWGG	2 cut(s)	67, 87
BstC8I	GCNNGC	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	67, 87
BstSCI	CCNGG	2 cut(s)	65, 85
BstUI	CGCG	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	65
CviJI	RGCY	4 cut(s)	90, 122, 134, 154
CviKI_1	RGCY	4 cut(s)	90, 122, 134, 154
Eco130I	CCWWGG	2 cut(s)	22, 149
Eco147I	AGGCCT	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	65, 85
EcoT14I	CCWWGG	2 cut(s)	22, 149
ErhI	CCWWGG	2 cut(s)	22, 149
FaiI	YATR	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	1 cut(s)	46
HpaII	CCGG	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	37, 61, 185
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	9 cut(s)	22, 52, 59, 72, 79, 93, 99, 147, 189
MabI	ACCWGGT	1 cut(s)	65
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	185
MboII	GAAGA	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	33
MnlI	CCTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	67, 87
MvaI	CCWGG	2 cut(s)	67, 87
MvnI	CGCG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	65, 85
PspGI	CCWGG	2 cut(s)	65, 85
PspPI	GGNCC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	67, 87
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	4 cut(s)	68, 124, 136, 169
SexAI	ACCWGGT	1 cut(s)	65
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	12
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	65, 85
StyI	CCWWGG	2 cut(s)	22, 149
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	164
XmaJI	CCTAGG	1 cut(s)	149
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.