RchiOBHm_Chr1g0383701

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
67930421 .. 67933684
3264 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 606 bp
ATGGAGGAGTCGTGGCGCGTTGAGGGAATCCGGTGCTTCGCAATTCGAAGGCTCAGAGAGCAGGTCGCAAAGCAATACACAGTCATGGATTTTTCAAGTGATTTCCGTCGGGCTTCACTTCTTTCGACACATACGAATTTTATCGCCCATACTGTGGTGTCTGTCATCCAACCGGTTTCTGGGTGTGGACTTACTATCCTTTCGATATTTTCCCAAATTTATCTGAAGGAAATCATAAATGCTGTTGACTGGCTGTGCGATACCTTGGCAGGCATTGGTACTATAGGAGCAAAAGGCTTCTGCTATATCTATCTTATCTTCCATCTACCATGGTTGGCAATTGTGGTCGTCATCTTGTTTGTACTCCTTAATGCTTGGCTACAAATCTACAGACGTCAACAAAAAGAACAGGAGTTGATGGAATATGAAGTTATTGAAGAAATTATATATGGCTTGGAATCTGGCATTTTGTTTGGAATGGCATCTGTAATATCAAAGATGGGCTTTGTGTTCTTGGAGCGGAGTTTCCCGAGTATACTAGTTCCTATATGCTTGGTAATCAGCATATGTTGTAGCAGTACAGGGTTTTTGATGCAGGACAAGTAG

Protein Analysis

201

Amino Acids

22.9

Weight (kDa)

5.93

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 397
Acc36I ACCTGC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 520
AccI GTMKAC 1 cut(s) 535
AccII CGCG 1 cut(s) 18
AciI CCGC 1 cut(s) 520
AcsI RAATTY 2 cut(s) 136, 216
AcuI CTGAAG 1 cut(s) 245
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 3 cut(s) 280, 363, 580
AfiI CCNNNNNNNGG 2 cut(s) 154, 179
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 2 cut(s) 96, 437
AhlI ACTAGT 1 cut(s) 538
Ama87I CYCGRG 1 cut(s) 529
ApoI RAATTY 2 cut(s) 136, 216
AsiGI ACCGGT 1 cut(s) 172
AspLEI GCGC 1 cut(s) 18
AsuII TTCGAA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 529
BccI CCATC 3 cut(s) 330, 412, 493
BcuI ACTAGT 1 cut(s) 538
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 2 cut(s) 282, 388
BfuAI ACCTGC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 529
BmsI GCATC 2 cut(s) 491, 582
Bpu14I TTCGAA 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 394
BsaJI CCNNGG 2 cut(s) 264, 329
BsaWI WCCGGW 2 cut(s) 30, 172
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 179
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 264, 329
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 154, 179
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 18
BshTI ACCGGT 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 2 cut(s) 31, 173
BslI CCNNNNNNNGG 2 cut(s) 154, 179
BsoBI CYCGRG 1 cut(s) 529
Bsp119I TTCGAA 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 1 cut(s) 520
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 520
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 264, 329
BssNAI GTATAC 1 cut(s) 536
BssNI GRCGYC 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 264, 329
Bst1107I GTATAC 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 82, 154
BstACI GRCGYC 1 cut(s) 394
BstBI TTCGAA 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstSFI CTRYAG 2 cut(s) 282, 388
BstUI CGCG 1 cut(s) 18
BstZ17I GTATAC 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 1 cut(s) 165
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 172
Csp6I GTAC 3 cut(s) 279, 362, 579
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 2 cut(s) 85, 330
CviJI RGCY 7 cut(s) 52, 113, 253, 297, 379, 453, 504
CviKI_1 RGCY 7 cut(s) 52, 113, 253, 297, 379, 453, 504
CviQI GTAC 3 cut(s) 279, 362, 579
DdeI CTNAG 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 264, 329
Eco57I CTGAAG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 529
EcoT14I CCWWGG 2 cut(s) 264, 329
ErhI CCWWGG 2 cut(s) 264, 329
FaeI CATG 2 cut(s) 88, 333
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FatI CATG 2 cut(s) 84, 329
FauNDI CATATG 1 cut(s) 566
FblI GTMKAC 1 cut(s) 535
FokI GGATG 1 cut(s) 152
FspBI CTAG 1 cut(s) 539
GlaI GCGC 1 cut(s) 17
HapII CCGG 2 cut(s) 31, 173
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 2 cut(s) 88, 333
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HincII GTYRAC 2 cut(s) 247, 398
HindII GTYRAC 2 cut(s) 247, 398
HinfI GANTC 3 cut(s) 8, 27, 458
HpaII CCGG 2 cut(s) 31, 173
Hpy166II GTNNAC 4 cut(s) 188, 247, 398, 536
Hpy188I TCNGA 2 cut(s) 56, 225
Hpy188III TCNNGA 1 cut(s) 529
Hpy8I GTNNAC 4 cut(s) 188, 247, 398, 536
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 42, 220
HpyCH4III ACNGT 2 cut(s) 82, 154
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 1 cut(s) 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 2 cut(s) 88, 333
HspAI GCGC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 287, 517
LweI GCATC 2 cut(s) 491, 582
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 394
MbiI CCGCTC 1 cut(s) 520
MboII GAAGA 2 cut(s) 310, 449
MfeI CAATTG 1 cut(s) 339
MluCI AATT 5 cut(s) 42, 136, 216, 339, 441
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 1 cut(s) 16
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 2 cut(s) 31, 173
MunI CAATTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 58
NcoI CCATGG 1 cut(s) 329
NdeI CATATG 1 cut(s) 566
NlaIII CATG 2 cut(s) 88, 333
NspV TTCGAA 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PfeI GAWTC 2 cut(s) 27, 458
PflMI CCANNNNNTGG 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 172
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
RsaI GTAC 3 cut(s) 280, 363, 580
RsaNI GTAC 3 cut(s) 279, 362, 579
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 369
SchI GAGTC 1 cut(s) 17
SetI ASST 3 cut(s) 66, 266, 397
SfaNI GCATC 2 cut(s) 491, 582
SfcI CTRYAG 2 cut(s) 282, 388
SfuI TTCGAA 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 538
Sse9I AATT 5 cut(s) 42, 136, 216, 339, 441
SsiI CCGC 1 cut(s) 520
SspMI CTAG 1 cut(s) 539
StyI CCWWGG 2 cut(s) 264, 329
TaaI ACNGT 2 cut(s) 82, 154
TaiI ACGT 1 cut(s) 397
TaqI TCGA 3 cut(s) 46, 125, 203
TasI AATT 5 cut(s) 42, 136, 216, 339, 441
TatI WGTACW 2 cut(s) 361, 578
TfiI GAWTC 2 cut(s) 27, 458
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 154
XapI RAATTY 2 cut(s) 136, 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 535
XspI CTAG 1 cut(s) 539
ZraI GACGTC 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.