RchiOBHm_Chr1g0384021

GTPase activity

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
68080786 .. 68083973
3188 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 150 bp
ATGAACGTTTTTAATACTGGATTGTCCTGTAACGCAGAGGGGAAGACAGTGAAAGCACAAATATGGGACACGGCAGGTCAGGAGAGGTACCGATCGAGCCATTACCAATGCTTACTACAGAGGTGCTGTTGGTGCTCTATTGATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

49

Amino Acids

5.63

Weight (kDa)

7.62

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Roc PF08477 8 - 39 1.3e-06 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 9 - 38 1.4e-07 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 65
Acc65I GGTACC 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 87
AclI AACGTT 1 cut(s) 6
AfaI GTAC 1 cut(s) 89
Alw21I GWGCWC 1 cut(s) 137
Asp718I GGTACC 1 cut(s) 87
BanI GGYRCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 137
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 92, 142
BspLI GGNNCC 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 22
BssMI GATC 2 cut(s) 92, 142
Bst4CI ACNGT 1 cut(s) 49
BstKTI GATC 2 cut(s) 95, 145
BstMBI GATC 2 cut(s) 92, 142
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 1 cut(s) 99
CviKI_1 RGCY 1 cut(s) 99
CviQI GTAC 1 cut(s) 88
DpnI GATC 2 cut(s) 94, 144
DpnII GATC 2 cut(s) 92, 142
FaiI YATR 2 cut(s) 64, 148
FaqI GGGAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 6
KpnI GGTACC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 92, 142
LpnPI CCDG 4 cut(s) 3, 40, 60, 65
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 94, 144
MboI GATC 2 cut(s) 92, 142
MboII GAAGA 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 137
MnlI CCTC 3 cut(s) 31, 78, 114
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 2 cut(s) 92, 142
NlaIV GGNNCC 1 cut(s) 89
Ple19I CGATCG 1 cut(s) 95
Psp1406I AACGTT 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 89
PvuI CGATCG 1 cut(s) 95
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 61
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 2 cut(s) 92, 142
SduI GDGCHC 1 cut(s) 137
SetI ASST 4 cut(s) 9, 79, 89, 125
SfcI CTRYAG 1 cut(s) 116
SgeI CNNG 6 cut(s) 30, 39, 82, 87, 92, 108
SmiMI CAYNNNNRTG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 95
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.