Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

68214797 .. 68215692

Gene Structure 896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGTCTCTACCTTTGAAGAAGAACTACAGGTGCGTCCCCTCTCTGCAACCGTTCTACTCCGGCGGCGCGTTCGCCGTCTCATCCGACGGTTCCTTCATCGCCTGCGCTTCCGGCGAGTCCATTAACATCGTCGATGCCTCCAACTCCTCTGTACGCTCCACTCTGGAAGGCGACTCCGAGGCCGTCACTGCTTTAACCCTCAGCCCCGACGACAAGTTGCTCTTCTCGTCCGGCCACAGTCGCCTCATTAGGGTTTGGGACCTCTCCACCTTCAAATGCGTCCGCTCTTGGAAGGGTCATGATGGGCCTGTGATGGGAATGGCTTGTCACCCATCCGGCGGATATCTTGCCACCGCCGGAGCCGATAAGAAGGTTATAGTTTGGGATGTTGCCGGTAGCTTTGCCACTCATCACTTCAAAGGTCACCAAGGGGTTGTTTCTAGTCTTCTCTTTCATCCAGATCCTACCAAGCAAATTCTTTTCTCCGCAAGTCATGATACAACTGTGAACGTCTGGGATCTAGATACTAAGAAGCGTGTCGCAACACTTACTGAGCATAACTCAACGGTAACTTCTATGGCATTATCCGAAGATGGGCGCACGTTGCTCACAGCTGGAAGAGATAAGGCAAGGCTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034388 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp13 WD40

Protein Analysis

214

Amino Acids

22.91

Weight (kDa)

7.76

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_DCAF4	PF23761	25 - 129	7.1e-08	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_WDHD1_1st	PF24817	25 - 100	1.1e-10	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	26 - 155	8.3e-21	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	26 - 130	1.3e-12	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	26 - 210	1.3e-34	WDR5 beta-propeller domain
Beta-prop_WDR75_1st	PF23869	27 - 89	2.5e-06	WD repeat-containing protein 75 first beta-propeller
WDR55	PF24796	27 - 131	1.3e-07	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	28 - 120	2.9e-08	WDR36/Utp21 second beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	29 - 129	2.7e-07	MABP1/WDR62 first WD40 domain
WD40_CDC20-Fz	PF24807	31 - 206	3.5e-24	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	31 - 207	2.8e-15	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	32 - 210	8.2e-33	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	33 - 210	9.5e-40	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	33 - 209	5.9e-16	WDR36/Utp21 first beta-propeller
WD40	PF00400	53 - 88	1.9e-06	WD domain, G-beta repeat
EIF3I	PF24805	55 - 132	8.5e-07	EIF3I
Beta-prop_EML_2	PF23414	64 - 209	1.1e-18	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	76 - 175	8.4e-12	MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd	PF25047	91 - 209	6.7e-15	TEP-1 second beta-propeller
WD40	PF00400	93 - 130	5.8e-10	WD domain, G-beta repeat
Beta-prop_EML	PF23409	96 - 209	1.6e-08	Echinoderm microtubule-associated protein first beta-propeller
WDR55	PF24796	97 - 209	6e-11	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	99 - 210	4.8e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_Aladin	PF25460	103 - 210	1e-07	Aladin seven-bladed propeller
WD40_WDHD1_1st	PF24817	104 - 185	2.8e-11	WDHD1 first WD40 domain
WD40_MABP1-WDR62_1st	PF24780	108 - 210	9.9e-09	MABP1/WDR62 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	111 - 207	3.6e-11	WDR90/POC16, second beta-propeller
Beta-prop_THOC3	PF25174	112 - 210	2.2e-19	THOC3 beta-propeller domain
Beta-prop_WDR41	PF25178	117 - 208	1.6e-07	WDR41
WD40	PF00400	138 - 174	5.2e-07	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	139 - 211	1.9e-10	WDR3 second beta-propeller domain
EIF3I	PF24805	140 - 206	9.4e-06	EIF3I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	288
AccII	CGCG	1 cut(s)	71
AciI	CCGC	5 cut(s)	66, 286, 342, 357, 489
AclWI	GGATC	2 cut(s)	458, 528
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	4 cut(s)	253, 317, 341, 597
AgsI	TTSAA	3 cut(s)	19, 277, 421
AluBI	AGCT	2 cut(s)	402, 617
AluI	AGCT	2 cut(s)	402, 617
Alw26I	GTCTC	2 cut(s)	12, 85
AlwI	GGATC	2 cut(s)	458, 528
AoxI	GGCC	3 cut(s)	183, 235, 308
ApoI	RAATTY	1 cut(s)	477
AspLEI	GCGC	3 cut(s)	71, 110, 603
AspS9I	GGNCC	2 cut(s)	262, 308
AsuHPI	GGTGA	2 cut(s)	323, 419
AvaII	GGWCC	1 cut(s)	262
BaeI	ACNNNNGTAYC	2 cut(s)	492, 525
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbsI	GAAGAC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	203
BccI	CCATC	4 cut(s)	299, 310, 343, 590
BceAI	ACGGC	2 cut(s)	62, 170
BcoDI	GTCTC	2 cut(s)	12, 85
BfaI	CTAG	2 cut(s)	444, 524
BfmI	CTRYAG	1 cut(s)	28
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	262, 308
BmiI	GGNNCC	3 cut(s)	94, 263, 364
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
Bpu10I	CCTNAGC	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	180, 430
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 317, 341, 597
Bse118I	RCCGGY	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	180, 430
BseGI	GGATG	4 cut(s)	83, 335, 394, 457
BseLI	CCNNNNNNNGG	4 cut(s)	253, 317, 341, 597
BseMII	CTCAG	2 cut(s)	217, 546
BseRI	GAGGAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	185, 237, 310
BsiSI	CCGG	6 cut(s)	63, 114, 234, 339, 360, 396
BslFI	GGGAC	2 cut(s)	23, 275
BslI	CCNNNNNNNGG	4 cut(s)	253, 317, 341, 597
BsmAI	GTCTC	2 cut(s)	12, 85
BsmBI	CGTCTC	2 cut(s)	12, 85
BsmFI	GGGAC	2 cut(s)	23, 275
BsnI	GGCC	3 cut(s)	185, 237, 310
Bsp143I	GATC	2 cut(s)	463, 520
BspACI	CCGC	5 cut(s)	66, 286, 342, 357, 489
BspANI	GGCC	3 cut(s)	185, 237, 310
BspCNI	CTCAG	2 cut(s)	216, 547
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	2 cut(s)	301, 496
BspLI	GGNNCC	3 cut(s)	94, 263, 364
BspPI	GGATC	2 cut(s)	458, 528
BspQI	GCTCTTC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	2 cut(s)	180, 430
BssMI	GATC	2 cut(s)	463, 520
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	5 cut(s)	54, 92, 242, 508, 571
Bst6I	CTCTTC	2 cut(s)	230, 616
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	3 cut(s)	203, 531, 555
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	4 cut(s)	83, 335, 394, 457
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	71, 110, 603
BstKTI	GATC	2 cut(s)	466, 523
BstMAI	GTCTC	2 cut(s)	12, 85
BstMBI	GATC	2 cut(s)	463, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 191, 243, 607
BstPI	GGTNACC	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	2 cut(s)	463, 520
BstYI	RGATCY	2 cut(s)	463, 520
BsuRI	GGCC	3 cut(s)	185, 237, 310
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	4 cut(s)	83, 335, 394, 457
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	106
CciI	TCATGA	2 cut(s)	301, 496
CfoI	GCGC	3 cut(s)	71, 110, 603
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	262, 308
CseI	GACGC	2 cut(s)	25, 271
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	2 cut(s)	302, 497
CviJI	RGCY	9 cut(s)	185, 207, 237, 310, 326, 365, 402, 617, 637
CviKI_1	RGCY	9 cut(s)	185, 207, 237, 310, 326, 365, 402, 617, 637
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	203, 531, 555
DpnI	GATC	2 cut(s)	465, 522
DpnII	GATC	2 cut(s)	463, 520
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	230, 616
EarI	CTCTTC	2 cut(s)	230, 616
EciI	GGCGGA	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	262
Eco91I	GGTNACC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	425
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
Esp3I	CGTCTC	2 cut(s)	12, 85
FaeI	CATG	2 cut(s)	305, 500
FaiI	YATR	6 cut(s)	303, 380, 498, 561, 581, 643
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	2 cut(s)	23, 275
FatI	CATG	2 cut(s)	301, 496
Fnu4HI	GCNGC	1 cut(s)	67
FokI	GGATG	4 cut(s)	70, 322, 401, 444
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	2 cut(s)	444, 524
GlaI	GCGC	3 cut(s)	70, 109, 602
GluI	GCNGC	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	185, 237, 310
HapII	CCGG	6 cut(s)	63, 114, 234, 339, 360, 396
HgaI	GACGC	2 cut(s)	25, 271
HhaI	GCGC	3 cut(s)	71, 110, 603
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	305, 500
Hin6I	GCGC	3 cut(s)	69, 108, 601
HinP1I	GCGC	3 cut(s)	69, 108, 601
HinfI	GANTC	2 cut(s)	119, 176
HpaII	CCGG	6 cut(s)	63, 114, 234, 339, 360, 396
HphI	GGTGA	2 cut(s)	323, 419
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	3 cut(s)	88, 181, 592
Hpy188III	TCNNGA	5 cut(s)	167, 302, 461, 497, 524
Hpy8I	GTNNAC	1 cut(s)	511
Hpy99I	CGWCG	3 cut(s)	92, 137, 215
HpyAV	CCTTC	5 cut(s)	106, 164, 283, 289, 367
HpyCH4III	ACNGT	5 cut(s)	54, 92, 242, 508, 571
HpyCH4IV	ACGT	2 cut(s)	513, 605
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 191, 243, 607
HpyF3I	CTNAG	3 cut(s)	203, 531, 555
HpySE526I	ACGT	2 cut(s)	513, 605
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	305, 500
HspAI	GCGC	3 cut(s)	69, 108, 601
Kzo9I	GATC	2 cut(s)	463, 520
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	2 cut(s)	164, 362
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	444, 524
MaeII	ACGT	2 cut(s)	513, 605
MaeIII	GTNAC	4 cut(s)	187, 329, 425, 571
MalI	GATC	2 cut(s)	465, 522
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	2 cut(s)	463, 520
MboII	GAAGA	6 cut(s)	31, 34, 217, 440, 605, 633
MflI	RGATCY	2 cut(s)	463, 520
MluCI	AATT	1 cut(s)	477
MlyI	GAGTC	2 cut(s)	128, 170
MmeI	TCCRAC	2 cut(s)	111, 168
MnlI	CCTC	7 cut(s)	52, 151, 160, 175, 212, 257, 275
MseI	TTAA	2 cut(s)	126, 197
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	6 cut(s)	63, 114, 234, 339, 360, 396
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	4 cut(s)	114, 191, 243, 607
NdeII	GATC	2 cut(s)	463, 520
NlaIII	CATG	2 cut(s)	305, 500
NlaIV	GGNNCC	3 cut(s)	94, 263, 364
NmuCI	GTSAC	3 cut(s)	187, 329, 425
PagI	TCATGA	2 cut(s)	301, 496
PciSI	GCTCTTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	68
PleI	GAGTC	2 cut(s)	127, 170
PpsI	GAGTC	2 cut(s)	127, 170
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
PspEI	GGTNACC	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	94, 263, 364
PspPI	GGNCC	2 cut(s)	262, 308
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	463, 520
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	126, 197
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	463, 520
Sau96I	GGNCC	2 cut(s)	262, 308
SchI	GAGTC	2 cut(s)	128, 170
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	5 cut(s)	66, 286, 342, 357, 489
SspMI	CTAG	2 cut(s)	444, 524
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	5 cut(s)	54, 92, 242, 508, 571
TaiI	ACGT	2 cut(s)	516, 608
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	477
TauI	GCSGC	1 cut(s)	69
Tru1I	TTAA	2 cut(s)	126, 197
Tru9I	TTAA	2 cut(s)	126, 197
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	3 cut(s)	187, 329, 425
Tsp45I	GTSAC	3 cut(s)	187, 329, 425
TspDTI	ATGAA	2 cut(s)	88, 446
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	477
XbaI	TCTAGA	1 cut(s)	523
XspI	CTAG	2 cut(s)	444, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.