PRQ60825

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
N/A
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGCGCGGTGTTCAAGCAAAGCCAGAGAGACGACGACCTGTTTTGGAGCGAAAGACATCCTTTGCTAAGAATCATAGGGTTGTTCCCTTCAATGCCGAACCAAGGCCAACTGACGATCTCTGCAAGCATTTTGAAGACTTGATGAGATTGTATCAGGCGGATTGCAAAGATGACAAAGACTTGCAAGACTTCGACGCCGAACTCAGCTCCAGCGCCAAAGAAGTCATCCGCAGTACCGGTCTTGATCGGTTTAAGCAATGCCTAAAGTATCTGACGCATTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

95

Amino Acids

11.14

Weight (kDa)

8.86

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 6
AciI CCGC 3 cut(s) 6, 158, 229
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 102
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 3 cut(s) 14, 91, 134
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 104
AsiGI ACCGGT 1 cut(s) 236
AspLEI GCGC 2 cut(s) 6, 215
BbsI GAAGAC 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 286
BfoI RGCGCY 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 2 cut(s) 56, 225
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 236
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 115, 244
BspACI CCGC 3 cut(s) 6, 158, 229
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 216
BspFNI CGCG 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 2 cut(s) 115, 244
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 66, 203
BstF5I GGATG 2 cut(s) 56, 225
BstFNI CGCG 1 cut(s) 6
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 6, 215
BstKTI GATC 2 cut(s) 118, 247
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 2 cut(s) 115, 244
BstUI CGCG 1 cut(s) 6
BstV2I GAAGAC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 2 cut(s) 56, 225
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 2 cut(s) 6, 215
Cfr10I RCCGGY 1 cut(s) 236
CseI GACGC 2 cut(s) 203, 283
Csp6I GTAC 1 cut(s) 234
CspAI ACCGGT 1 cut(s) 236
CviJI RGCY 3 cut(s) 22, 106, 207
CviKI_1 RGCY 3 cut(s) 22, 106, 207
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 66, 203
DpnI GATC 2 cut(s) 117, 246
DpnII GATC 2 cut(s) 115, 244
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 22
FaiI YATR 1 cut(s) 75
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FokI GGATG 2 cut(s) 43, 212
FspBI CTAG 1 cut(s) 286
GlaI GCGC 2 cut(s) 5, 214
GsuI CTGGAG 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 237
HgaI GACGC 2 cut(s) 203, 283
HhaI GCGC 2 cut(s) 6, 215
Hin1I GRCGYC 1 cut(s) 195
Hin6I GCGC 2 cut(s) 4, 213
HinP1I GCGC 2 cut(s) 4, 213
HinfI GANTC 1 cut(s) 70
HpaII CCGG 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 242
Hpy99I CGWCG 2 cut(s) 36, 197
HpyAV CCTTC 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 123, 165, 184
HpyF3I CTNAG 2 cut(s) 66, 203
Hsp92I GRCGYC 1 cut(s) 195
HspAI GCGC 2 cut(s) 4, 213
Kzo9I GATC 2 cut(s) 115, 244
LmnI GCTCC 2 cut(s) 46, 212
LpnPI CCDG 5 cut(s) 36, 51, 140, 223, 250
MaeI CTAG 1 cut(s) 286
MalI GATC 2 cut(s) 117, 246
MboI GATC 2 cut(s) 115, 244
MboII GAAGA 1 cut(s) 146
MseI TTAA 1 cut(s) 252
MspI CCGG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 277
MvnI CGCG 1 cut(s) 6
NdeII GATC 2 cut(s) 115, 244
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 236
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 2 cut(s) 115, 244
SetI ASST 2 cut(s) 40, 209
SsiI CCGC 3 cut(s) 6, 158, 229
SspMI CTAG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 101
TaqI TCGA 1 cut(s) 192
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.