RchiOBHm_Chr1g0319201

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
6867143 .. 6868006
864 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54945

Sequence Viewer

Length: 438 bp
ATGGATCCAATGAGAAGAATAGGGCTGGATTGGGCTAGCCGCTTCAATATCATTCAGGGTGTGGCTAGAAGGCTTCTTTATCTTCATCATGATTCTTGTTTGAAGGTGATACATAGAGATCTGAAGGTCAGCAACATTCTCTTGGATGAGAAAATGAACCCAAAAATCTCAGATTTTGGATTGGCTCGTATTGTTCATGGACGAATAATCTTGAGAATACTGAGAAGTGGCTACATGTCTCCGGAGTATGCCATGGGCGGGATATTTTCTGAAAACTCAGATGTGTACAACTTTGGGGTCATGGCATGGTACTTGTGGACTGAAGGCAAGGGGCTTGACTTTGTAGATGAAGAATTGGCCGAGGCATATTCCTCATCAGAAGTAATGAGATTTGTCCACATAGGACTTCTTTATGTACAGGATGAACCGGGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

145

Amino Acids

16.75

Weight (kDa)

6.19

Isoelectric Point (pI)

58.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 11 - 110 3.1e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 16 - 108 3.3e-18 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 2 cut(s) 40, 258
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 2 cut(s) 143, 342
AfaI GTAC 3 cut(s) 287, 311, 417
AfiI CCNNNNNNNGG 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 46, 103
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 118
AsuNHI GCTAGC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 4
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 2 cut(s) 36, 66
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 429
BmtI GCTAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 252, 360
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 252, 360
BseGI GGATG 2 cut(s) 151, 427
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 3 cut(s) 183, 212, 291
BshFI GGCC 1 cut(s) 359
BsiSI CCGG 2 cut(s) 242, 428
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 359
Bsp13I TCCGGA 1 cut(s) 241
Bsp1407I TGTACA 2 cut(s) 285, 415
Bsp143I GATC 2 cut(s) 4, 118
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 2 cut(s) 40, 258
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 3 cut(s) 182, 213, 290
BspEI TCCGGA 1 cut(s) 241
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 12
BsrGI TGTACA 2 cut(s) 285, 415
BssECI CCNNGG 2 cut(s) 252, 360
BssMI GATC 2 cut(s) 4, 118
BssT1I CCWWGG 1 cut(s) 252
BstAUI TGTACA 2 cut(s) 285, 415
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 169, 221, 277
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 151, 427
BstKTI GATC 2 cut(s) 7, 121
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 2 cut(s) 4, 118
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 427
BstX2I RGATCY 2 cut(s) 4, 118
BstYI RGATCY 2 cut(s) 4, 118
BsuRI GGCC 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 151, 427
Cac8I GCNNGC 1 cut(s) 37
CciI TCATGA 1 cut(s) 88
Csp6I GTAC 3 cut(s) 286, 310, 416
CviAII CATG 6 cut(s) 89, 197, 235, 253, 301, 306
CviJI RGCY 9 cut(s) 25, 35, 39, 65, 73, 185, 231, 334, 359
CviKI_1 RGCY 9 cut(s) 25, 35, 39, 65, 73, 185, 231, 334, 359
CviQI GTAC 3 cut(s) 286, 310, 416
DdeI CTNAG 3 cut(s) 169, 221, 277
DpnI GATC 2 cut(s) 6, 120
DpnII GATC 2 cut(s) 4, 118
EaeI YGGCCR 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 252
Eco57I CTGAAG 2 cut(s) 143, 342
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 6 cut(s) 92, 200, 238, 256, 304, 309
FatI CATG 6 cut(s) 88, 196, 234, 252, 300, 305
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 158, 434
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 2 cut(s) 36, 66
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 359
HapII CCGG 2 cut(s) 242, 428
Hin1II CATG 6 cut(s) 92, 200, 238, 256, 304, 309
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 242, 428
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 286, 318, 397
Hpy188I TCNGA 5 cut(s) 123, 172, 271, 280, 379
Hpy188III TCNNGA 3 cut(s) 89, 211, 242
Hpy8I GTNNAC 3 cut(s) 286, 318, 397
HpyAV CCTTC 4 cut(s) 63, 97, 118, 317
HpyF3I CTNAG 3 cut(s) 169, 221, 277
Hsp92II CATG 6 cut(s) 92, 200, 238, 256, 304, 309
Kpn2I TCCGGA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 4, 118
LpnPI CCDG 4 cut(s) 11, 41, 255, 404
MaeI CTAG 2 cut(s) 36, 66
MalI GATC 2 cut(s) 6, 120
MboI GATC 2 cut(s) 4, 118
MboII GAAGA 3 cut(s) 27, 74, 362
MflI RGATCY 2 cut(s) 4, 118
MluCI AATT 1 cut(s) 353
MnlI CCTC 2 cut(s) 355, 382
MroI TCCGGA 1 cut(s) 241
MspI CCGG 2 cut(s) 242, 428
MspR9I CCNGG 1 cut(s) 429
NciI CCSGG 1 cut(s) 429
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 4, 118
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 6 cut(s) 92, 200, 238, 256, 304, 309
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 385
NspI RCATGY 1 cut(s) 238
PagI TCATGA 1 cut(s) 88
PciI ACATGT 1 cut(s) 234
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 41
PscI ACATGT 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 4, 118
RsaI GTAC 3 cut(s) 287, 311, 417
RsaNI GTAC 3 cut(s) 286, 310, 416
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 4, 118
ScrFI CCNGG 1 cut(s) 429
SetI ASST 2 cut(s) 108, 129
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 1 cut(s) 353
SsiI CCGC 2 cut(s) 40, 258
SspMI CTAG 2 cut(s) 36, 66
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 252
TaqI TCGA 1 cut(s) 433
TasI AATT 1 cut(s) 353
TatI WGTACW 2 cut(s) 285, 415
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 92
TspDTI ATGAA 5 cut(s) 74, 170, 185, 363, 438
XceI RCATGY 1 cut(s) 238
XspI CTAG 2 cut(s) 36, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.