RchiOBHm_Chr1g0319301

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
6907830 .. 6908902
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54955

Sequence Viewer

Length: 330 bp
ATGGCTGATAAGATTCAGACTTCACGAGCCACAATAAGAGAATATATTGGAAAAGATGATCCATCTGAGCTATTGATCTATGATTTTGATAACATATTAGTTGCTACAAACAATTTCAGTCTCGCAAACAAACTCAGGCAAGGAGGATTTGGCCCAGTTTATAAGGGTAAGCTACCAGAAGGGAAGGAAATAGCAGTAAAAAGACTATCTAGTAGCTCAGGCCAAGGCAAAGAAGAGTTCAACAATGAGACTTTGTTGATCTCCAATCTTCAACATAAAAATCTTGTTAGACTCATGGGTGCTGTGTTAAAGGGGATGAGAAGTTACTGA

Protein Analysis

109

Amino Acids

12.15

Weight (kDa)

9.43

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 41 - 105 9.5e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 42 - 104 5.3e-07 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AclWI GGATC 1 cut(s) 53
AgsI TTSAA 2 cut(s) 241, 272
AluBI AGCT 3 cut(s) 70, 172, 216
AluI AGCT 3 cut(s) 70, 172, 216
Alw26I GTCTC 2 cut(s) 125, 242
AlwI GGATC 1 cut(s) 53
AoxI GGCC 2 cut(s) 151, 220
AspS9I GGNCC 1 cut(s) 152
BauI CACGAG 1 cut(s) 24
BccI CCATC 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 125, 242
BfaI CTAG 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 149
BmuI ACTGGG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 321
BseMII CTCAG 3 cut(s) 57, 148, 231
BseNI ACTGG 1 cut(s) 155
BshFI GGCC 2 cut(s) 153, 222
BsmAI GTCTC 2 cut(s) 125, 242
BsnI GGCC 2 cut(s) 153, 222
Bsp143I GATC 3 cut(s) 58, 75, 258
BspANI GGCC 2 cut(s) 153, 222
BspCNI CTCAG 3 cut(s) 58, 147, 230
BspPI GGATC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 3 cut(s) 58, 75, 258
BssSI CACGAG 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 66, 134, 217
BstF5I GGATG 1 cut(s) 321
BstKTI GATC 3 cut(s) 61, 78, 261
BstMAI GTCTC 2 cut(s) 125, 242
BstMBI GATC 3 cut(s) 58, 75, 258
BsuRI GGCC 2 cut(s) 153, 222
BtsCI GGATG 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 152
CviAII CATG 1 cut(s) 295
CviJI RGCY 7 cut(s) 5, 29, 70, 153, 172, 216, 222
CviKI_1 RGCY 7 cut(s) 5, 29, 70, 153, 172, 216, 222
DdeI CTNAG 3 cut(s) 66, 134, 217
DpnI GATC 3 cut(s) 60, 77, 260
DpnII GATC 3 cut(s) 58, 75, 258
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 1 cut(s) 298
FaiI YATR 6 cut(s) 45, 81, 95, 162, 276, 296
FatI CATG 1 cut(s) 294
FspBI CTAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 153, 222
Hin1II CATG 1 cut(s) 298
HinfI GANTC 2 cut(s) 13, 291
Hpy188I TCNGA 2 cut(s) 18, 67
Hpy188III TCNNGA 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 173, 178
HpyF3I CTNAG 3 cut(s) 66, 134, 217
Hsp92II CATG 1 cut(s) 298
Kzo9I GATC 3 cut(s) 58, 75, 258
LpnPI CCDG 4 cut(s) 121, 168, 189, 204
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 323
MalI GATC 3 cut(s) 60, 77, 260
MboI GATC 3 cut(s) 58, 75, 258
MboII GAAGA 2 cut(s) 245, 260
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 1 cut(s) 137
MseI TTAA 1 cut(s) 308
NdeII GATC 3 cut(s) 58, 75, 258
NlaIII CATG 1 cut(s) 298
PfeI GAWTC 1 cut(s) 13
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PsiI TTATAA 1 cut(s) 162
PspPI GGNCC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 308
Sau3AI GATC 3 cut(s) 58, 75, 258
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 285
SetI ASST 3 cut(s) 72, 174, 218
Sse9I AATT 1 cut(s) 112
SspMI CTAG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 223
TasI AATT 1 cut(s) 112
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.