RchiOBHm_Chr1g0320011

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
7648919 .. 7649411
493 bp
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UTR
Exon/CDS
Intron
PRQ55019

Sequence Viewer

Length: 438 bp
ATGTATGTCTTCAAATCTGTAACTTTAAACATTGAACACCCCGCAGCAACGCGCGGGTCATTTCTAGTTGTTACGAACTGCAATGGATTGCCATTGGCTGCAAAAACTCTTGGTGGTGTTTTACGTTGTAAAGAAACTGACAAGTGGGAGGAAATACTGAATGACAAATTATGGAGTACATCAGATAGGAGTGATATACTCCCAGTACTGAGATTGAGTTATCATTATCTCCCTTCAACTTTGAAGAGGTGCTTTGCTTATTGCTCAATACTTCCCAATGACTACAAATTTGAGAAAACCCAATTAATCCTTCTGTGGATGGCAGAGGGTTTCCTTGAGCAACCAGAAGGGGCTAAAGCAATGGAAGATATTGGTGACGAATATTTTGAGGAGCTATTGTCTCTGTCATTATTTCAAAATTCGGGCAAAAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.49

Weight (kDa)

5.2

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 90 - 141 6.2e-19 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 52, 54
AciI CCGC 2 cut(s) 42, 54
AcsI RAATTY 2 cut(s) 287, 418
AfaI GTAC 2 cut(s) 178, 207
AgsI TTSAA 5 cut(s) 13, 35, 237, 244, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 44, 98
ApoI RAATTY 2 cut(s) 287, 418
ArsI GACNNNNNNTTYG 4 cut(s) 272, 304, 368, 400
AseI ATTAAT 1 cut(s) 305
AspLEI GCGC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 386
BbvI GCAGC 2 cut(s) 56, 85
BccI CCATC 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 45, 99
BlsI GCNGC 2 cut(s) 46, 100
BmcAI AGTACT 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 2 cut(s) 88, 366
BseGI GGATG 1 cut(s) 324
BseMI GCAATG 2 cut(s) 88, 366
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 2 cut(s) 56, 85
Bsh1236I CGCG 2 cut(s) 52, 54
BsmAI GTCTC 1 cut(s) 405
BspACI CCGC 2 cut(s) 42, 54
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 2 cut(s) 52, 54
BsrDI GCAATG 2 cut(s) 88, 366
BsrI ACTGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 2 cut(s) 52, 54
BstHHI GCGC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 405
BstUI CGCG 2 cut(s) 52, 54
BstV1I GCAGC 2 cut(s) 56, 85
BtsCI GGATG 1 cut(s) 324
CfoI GCGC 1 cut(s) 54
Csp6I GTAC 2 cut(s) 177, 206
CviJI RGCY 3 cut(s) 98, 353, 394
CviKI_1 RGCY 3 cut(s) 98, 353, 394
CviQI GTAC 2 cut(s) 177, 206
DdeI CTNAG 1 cut(s) 209
DraI TTTAAA 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
FaiI YATR 3 cut(s) 6, 172, 197
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FauI CCCGC 2 cut(s) 47, 49
Fnu4HI GCNGC 2 cut(s) 45, 99
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 45, 99
FspBI CTAG 1 cut(s) 65
GlaI GCGC 1 cut(s) 53
GluI GCNGC 2 cut(s) 45, 99
HhaI GCGC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HphI GGTGA 1 cut(s) 386
Hpy188I TCNGA 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 243, 320, 341
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 81, 101
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 124
HspAI GCGC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 391
LpnPI CCDG 2 cut(s) 216, 357
Lsp1109I GCAGC 2 cut(s) 56, 85
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 3 cut(s) 19, 70, 374
MboII GAAGA 2 cut(s) 256, 377
MluCI AATT 4 cut(s) 167, 287, 302, 418
MnlI CCTC 4 cut(s) 142, 240, 319, 382
MseI TTAA 2 cut(s) 26, 305
MvnI CGCG 2 cut(s) 52, 54
NmuCI GTSAC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 46, 100
PshBI ATTAAT 1 cut(s) 305
RsaI GTAC 2 cut(s) 178, 207
RsaNI GTAC 2 cut(s) 177, 206
SaqAI TTAA 2 cut(s) 26, 305
SatI GCNGC 2 cut(s) 45, 99
ScaI AGTACT 1 cut(s) 207
SetI ASST 3 cut(s) 127, 251, 396
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 4 cut(s) 167, 287, 302, 418
SsiI CCGC 2 cut(s) 42, 54
SspI AATATT 1 cut(s) 383
SspMI CTAG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 1 cut(s) 127
TasI AATT 4 cut(s) 167, 287, 302, 418
TatI WGTACW 2 cut(s) 176, 205
Tru1I TTAA 2 cut(s) 26, 305
Tru9I TTAA 2 cut(s) 26, 305
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 44, 98
Tsp45I GTSAC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 305
XapI RAATTY 2 cut(s) 287, 418
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.