RchiOBHm_Chr1g0320531

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
8166561 .. 8166925
365 bp
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UTR
Exon/CDS
Intron
PRQ55067

Sequence Viewer

Length: 156 bp
ATGGATGACATCTTGGACACCTTTTCCACCCAGCTCTTGGTGATCAATCACCAAAATGGGGCTGGCACAAGCAAGGTACAACGCCTCTTCTCACCCAACTCCTCATATATAGTTGTTTGGGCCTCATCAGCACCTCTGGCATACCAATTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

51

Amino Acids

5.63

Weight (kDa)

5.28

Isoelectric Point (pI)

21.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 37
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 37, 58
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
AoxI GGCC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 41, 52, 84
BclI TGATCA 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 58
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 37, 58
BseRI GAGGAG 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 37, 58
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 42
BspANI GGCC 1 cut(s) 122
BssMI GATC 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 128, 137
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 153
CviJI RGCY 3 cut(s) 34, 62, 122
CviKI_1 RGCY 3 cut(s) 34, 62, 122
CviQI GTAC 1 cut(s) 77
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
FaeI CATG 1 cut(s) 156
FaiI YATR 5 cut(s) 106, 108, 110, 142, 154
FatI CATG 1 cut(s) 152
FbaI TGATCA 1 cut(s) 42
FokI GGATG 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 122
Hin1II CATG 1 cut(s) 156
HphI GGTGA 3 cut(s) 41, 52, 84
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 137
Hsp92II CATG 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 3 cut(s) 44, 48, 122
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 79
MluCI AATT 1 cut(s) 146
MnlI CCTC 4 cut(s) 95, 112, 133, 144
MslI CAYNNNNRTG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 128, 137
NdeII GATC 1 cut(s) 42
NlaIII CATG 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 120
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 54
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 120
SetI ASST 4 cut(s) 23, 36, 78, 136
SgeI CNNG 7 cut(s) 25, 43, 49, 75, 81, 85, 149
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 1 cut(s) 146
TasI AATT 1 cut(s) 146
Van91I CCANNNNNTGG 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 2 cut(s) 34, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.