Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9379724 .. 9381417

Gene Structure 1694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCATCACAAGGGGTCCGTGATTTTAGGATGGAAATTTCGATGCTCTCTCGACTTCATCACCGCCATTTAGTGTCTCTTATTGGATACTGTGCCGATGAAGGTGAGACGATCTTGGTGTATGATTACATGGCACGTGGGACTCTTGGTGACCATCTCTACCACACTGATAATCCACCTCTTTCAAGGGAACAACGGCTTCAAATTTGTGTTGGTGCAGCGCAAGGTTTGCAATATCTACATACAGGTACTAAAGGCACCATCATTTACCGTGACGTGAAGAGCACAAACATATTATTGGATGAGAAATGGGTAGCCAAAGTTTCAGATTTTGGGTTGTTGAAGAATGGCCAATCACCCTTTCCAAGACCCACATTAGCACAAAGCAATTGTCACTCGCACTTTCACATTCATTCACCGAGTTACACAACACGAACACTCCGGCTAGCAATGCTGAATCGTGTAATTACATCCAAGGCAGAGAGAACCCTGCGGCTTAAATCGATCCTTCCTCAGCCTACAATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

176

Amino Acids

19.98

Weight (kDa)

9.54

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 117	1.2e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	7 - 120	7.3e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	2 cut(s)	64, 493
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	36, 204
AcvI	CACGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	186, 203, 343
AjiI	CACGTC	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	2 cut(s)	81, 101
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	36, 204
ArsI	GACNNNNNNTTYG	2 cut(s)	376, 408
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	5 cut(s)	53, 116, 161, 348, 408
AsuNHI	GCTAGC	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	257
BbrPI	CACGTG	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	287
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	3 cut(s)	25, 162, 269
BceAI	ACGGC	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	81, 101
BfaI	CTAG	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	219, 494
BlsI	GCNGC	2 cut(s)	220, 495
Bme18I	GGWCC	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	17, 259
BmsI	GCATC	1 cut(s)	33
BmtI	GCTAGC	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	513
Bsa29I	ATCGAT	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bse3DI	GCAATG	1 cut(s)	456
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	3 cut(s)	36, 307, 470
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	81, 101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	111, 504
BspACI	CCGC	2 cut(s)	64, 493
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	526
BspDI	ATCGAT	1 cut(s)	503
BspLI	GGNNCC	2 cut(s)	17, 259
BspOI	GCTAGC	1 cut(s)	449
BspPI	GGATC	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	2 cut(s)	111, 504
BssT1I	CCWWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	92, 272
Bst6I	CTCTTC	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	513
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	36, 307, 470
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	114, 507
BstMAI	GTCTC	2 cut(s)	81, 101
BstMBI	GATC	2 cut(s)	111, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 451
BstPI	GGTNACC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	230
Bsu15I	ATCGAT	1 cut(s)	503
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	503
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	36, 307, 470
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	6 cut(s)	199, 317, 351, 445, 496, 517
CviKI_1	RGCY	6 cut(s)	199, 317, 351, 445, 496, 517
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	2 cut(s)	113, 506
DpnII	GATC	2 cut(s)	111, 504
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	16
Eco72I	CACGTG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	133
FaiI	YATR	4 cut(s)	123, 131, 243, 293
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	219, 494
FokI	GGATG	3 cut(s)	43, 314, 457
Fsp4HI	GCNGC	2 cut(s)	219, 494
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	2 cut(s)	219, 494
HaeIII	GGCC	1 cut(s)	351
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	2 cut(s)	142, 457
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	5 cut(s)	53, 116, 161, 348, 408
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	95, 518
HpyCH4III	ACNGT	2 cut(s)	92, 272
HpyCH4IV	ACGT	2 cut(s)	136, 276
HpyCH4V	TGCA	2 cut(s)	218, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 451
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	2 cut(s)	136, 276
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	111, 504
LguI	GCTCTTC	1 cut(s)	275
LpnPI	CCDG	3 cut(s)	231, 455, 503
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	2 cut(s)	136, 276
MaeIII	GTNAC	4 cut(s)	149, 272, 392, 422
MalI	GATC	2 cut(s)	113, 506
MboI	GATC	2 cut(s)	111, 504
MboII	GAAGA	2 cut(s)	292, 355
MfeI	CAATTG	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	4 cut(s)	36, 204, 388, 465
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	189, 522
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	351
MspI	CCGG	1 cut(s)	442
MunI	CAATTG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	229, 451
NdeII	GATC	2 cut(s)	111, 504
NheI	GCTAGC	1 cut(s)	445
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	17, 259
NmuCI	GTSAC	3 cut(s)	149, 272, 392
PciSI	GCTCTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	220, 495
PleI	GAGTC	1 cut(s)	136
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	137
PspCI	CACGTG	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	17, 259
PspPI	GGNCC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	219, 494
Sau3AI	GATC	2 cut(s)	111, 504
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	6 cut(s)	106, 139, 181, 229, 250, 279
SfaNI	GCATC	1 cut(s)	33
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	4 cut(s)	36, 204, 388, 465
SsiI	CCGC	2 cut(s)	64, 493
SspMI	CTAG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	92, 272
TaiI	ACGT	2 cut(s)	139, 279
TaqI	TCGA	3 cut(s)	41, 52, 503
TasI	AATT	4 cut(s)	36, 204, 388, 465
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	3 cut(s)	149, 272, 392
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	3 cut(s)	149, 272, 392
TspDTI	ATGAA	3 cut(s)	47, 114, 401
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	36, 204
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.