RchiOBHm_Chr1g0325411
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
13371150 .. 13372104
955 bp
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UTR
Exon/CDS
Intron
PRQ55514

Sequence Viewer

Length: 483 bp
ATGCCCGTTTTGTTTTGCTTTTTTTTTTTTCCTTCTTTTATCATTGTTGAAGAGACAGATTTGTCCTTAATAATTGGATGGAAAACATACAAAGAAGCCAAAAGTTTAAGCCTTGTTCAGAGGCTCAACATTGCCATTGAGGTTGCTTGTGCATTGGATTATCTTCACAACCACCATGAAACACCGATAGTTCATTGTGATCTTAAGCCAAGTAATGTTCTTTTGGACAGTGACCTGACTGGTCATGTTTCTAACTTTGGGCTTTCAAGATTTCTCTCAGAACCAACCAATAATGTTTCTATAAATCAATCAAGCTCCATTGAAATCAGCGGATCAGTTGGTTACGCTGCTTCAGGTAACTTTCCTCATATTCTTCACATCTATCTTTCCCATTTATTGTTGCACAATGCTATTTTATTTTTTAAGTACAGTTGTAGTGACAAATGTCTTATCACATTATTTAAACTGGTGAGTATGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

160

Amino Acids

17.93

Weight (kDa)

6.1

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 30 - 102 1.7e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 32 - 97 6.2e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AciI CCGC 1 cut(s) 330
AclWI GGATC 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 1 cut(s) 428
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 3 cut(s) 50, 267, 323
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 481
BbvI GCAGC 1 cut(s) 334
BccI CCATC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
BoxI GACNNNNGTC 1 cut(s) 444
Bse1I ACTGG 2 cut(s) 244, 471
Bse3DI GCAATG 1 cut(s) 129
BseGI GGATG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 2 cut(s) 244, 471
BseXI GCAGC 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 199, 332
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 340
BspTI CTTAAG 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 2 cut(s) 244, 471
BssMI GATC 2 cut(s) 199, 332
Bst4CI ACNGT 2 cut(s) 230, 431
Bst6I CTCTTC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 2 cut(s) 202, 335
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 199, 332
BstPAI GACNNNNGTC 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 334
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 235
Csp6I GTAC 1 cut(s) 427
CviAII CATG 2 cut(s) 176, 245
CviJI RGCY 6 cut(s) 98, 111, 124, 208, 262, 315
CviKI_1 RGCY 6 cut(s) 98, 111, 124, 208, 262, 315
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 277
DpnI GATC 2 cut(s) 201, 334
DpnII GATC 2 cut(s) 199, 332
DraI TTTAAA 1 cut(s) 463
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 336
FaeI CATG 2 cut(s) 179, 248
FaiI YATR 7 cut(s) 88, 177, 246, 302, 369, 476, 481
FatI CATG 2 cut(s) 175, 244
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 348
Hin1II CATG 2 cut(s) 179, 248
HphI GGTGA 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 120, 280
Hpy188III TCNNGA 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 2 cut(s) 230, 431
HpyCH4V TGCA 2 cut(s) 152, 403
HpyF3I CTNAG 1 cut(s) 277
Hsp92II CATG 2 cut(s) 179, 248
Kzo9I GATC 2 cut(s) 199, 332
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 4 cut(s) 225, 248, 339, 452
Lsp1109I GCAGC 1 cut(s) 334
MaeIII GTNAC 4 cut(s) 230, 341, 356, 437
MalI GATC 2 cut(s) 201, 334
MboI GATC 2 cut(s) 199, 332
MboII GAAGA 3 cut(s) 62, 155, 365
MluCI AATT 1 cut(s) 72
MnlI CCTC 3 cut(s) 114, 133, 375
MseI TTAA 5 cut(s) 68, 107, 204, 423, 462
MspA1I CMGCKG 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 203
NdeII GATC 2 cut(s) 199, 332
NlaIII CATG 2 cut(s) 179, 248
NmuCI GTSAC 2 cut(s) 230, 437
PkrI GCNGC 1 cut(s) 349
PshAI GACNNNNGTC 1 cut(s) 444
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 5 cut(s) 68, 107, 204, 423, 462
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 2 cut(s) 199, 332
SetI ASST 4 cut(s) 144, 237, 317, 358
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 330
TaaI ACNGT 2 cut(s) 230, 431
TasI AATT 1 cut(s) 72
TatI WGTACW 1 cut(s) 426
Tru1I TTAA 5 cut(s) 68, 107, 204, 423, 462
Tru9I TTAA 5 cut(s) 68, 107, 204, 423, 462
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 2 cut(s) 230, 437
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 230, 437
TspDTI ATGAA 2 cut(s) 182, 192
TspRI CASTG 1 cut(s) 235
Vha464I CTTAAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.