RchiOBHm_Chr1g0326911

Protein kinase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
15474873 .. 15475235
363 bp
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UTR
Exon/CDS
Intron
PRQ55648

Sequence Viewer

Length: 363 bp
ATGCTCCTAACCAATTTTAGAGGGACAGCCGGATATGCAGCCCTAGAGATGTGGAAGCCTTATCCTATGACTCACAAATGTGATGTTTACAGTTTTGGTATTTTTCTCTTTGAGATTGTTGGAAGAAGAAGACACTGCGATGATAATGTGAGCGAGTCCCGAGACTGGCTACCTAAGTGGACATGGAACATGTTTGAGAAAAATGACTTAGCAGCACTATTATTGCATTGTGGGATCGAAGAGAGACTAGAGAGACAGGGGAAAAGCAGAGAGGATGTTAATGATAGCTCTGTGGTGCATTCAGCATTCACCAGAAGCAAGACCTCTCATGAGCAATGTAGTGCAAATGTTGGAGGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.8

Weight (kDa)

6.5

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 189
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw26I GTCTC 3 cut(s) 156, 238, 247
AlwI GGATC 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 38, 212
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 2 cut(s) 50, 224
BcoDI GTCTC 3 cut(s) 156, 238, 247
BfaI CTAG 2 cut(s) 44, 248
BisI GCNGC 2 cut(s) 39, 213
BlsI GCNGC 2 cut(s) 40, 214
BmeT110I CYCGRG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 341
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 50, 224
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 2 cut(s) 37, 142
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 3 cut(s) 156, 238, 247
BsmFI GGGAC 2 cut(s) 37, 142
BsmI GAATGC 2 cut(s) 298, 305
BsoBI CYCGRG 1 cut(s) 159
Bsp143I GATC 1 cut(s) 234
BspHI TCATGA 1 cut(s) 328
BspPI GGATC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 1 cut(s) 170
BssMI GATC 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 174, 208
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 3 cut(s) 156, 238, 247
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 50, 224
BstV2I GAAGAC 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
CciI TCATGA 1 cut(s) 328
CviAII CATG 3 cut(s) 183, 190, 329
CviJI RGCY 5 cut(s) 29, 41, 58, 169, 288
CviKI_1 RGCY 5 cut(s) 29, 41, 58, 169, 288
DdeI CTNAG 2 cut(s) 174, 208
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 159
FaeI CATG 3 cut(s) 186, 193, 332
FaiI YATR 6 cut(s) 36, 68, 184, 191, 330, 361
FaqI GGGAC 2 cut(s) 37, 142
FatI CATG 3 cut(s) 182, 189, 328
Fnu4HI GCNGC 2 cut(s) 39, 213
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 39, 213
FspBI CTAG 2 cut(s) 44, 248
GluI GCNGC 2 cut(s) 39, 213
HapII CCGG 1 cut(s) 30
Hin1II CATG 3 cut(s) 186, 193, 332
HinfI GANTC 2 cut(s) 70, 155
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 88, 180
Hpy188III TCNNGA 2 cut(s) 159, 329
Hpy8I GTNNAC 2 cut(s) 88, 180
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 38, 226, 298, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 174, 208
Hsp92II CATG 3 cut(s) 186, 193, 332
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 43, 151, 242, 325
Lsp1109I GCAGC 2 cut(s) 50, 224
MaeI CTAG 2 cut(s) 44, 248
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 4 cut(s) 135, 138, 141, 251
MluCI AATT 1 cut(s) 13
MlyI GAGTC 2 cut(s) 64, 164
MmeI TCCRAC 2 cut(s) 100, 331
MnlI CCTC 4 cut(s) 14, 265, 334, 347
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 2 cut(s) 78, 138
MspI CCGG 1 cut(s) 30
Mva1269I GAATGC 2 cut(s) 298, 305
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 234
NlaIII CATG 3 cut(s) 186, 193, 332
NspI RCATGY 1 cut(s) 193
OliI CACNNNNGTG 1 cut(s) 78
PagI TCATGA 1 cut(s) 328
PciI ACATGT 1 cut(s) 189
PctI GAATGC 2 cut(s) 298, 305
PkrI GCNGC 2 cut(s) 40, 214
PleI GAGTC 2 cut(s) 64, 163
PpsI GAGTC 2 cut(s) 64, 163
PscI ACATGT 1 cut(s) 189
RseI CAYNNNNRTG 2 cut(s) 78, 138
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 2 cut(s) 39, 213
Sau3AI GATC 1 cut(s) 234
SchI GAGTC 2 cut(s) 64, 164
SetI ASST 3 cut(s) 175, 290, 326
SmiMI CAYNNNNRTG 2 cut(s) 78, 138
Sse9I AATT 1 cut(s) 13
SspMI CTAG 2 cut(s) 44, 248
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 13
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 140
TseI GCWGC 2 cut(s) 38, 212
TspRI CASTG 1 cut(s) 140
XceI RCATGY 1 cut(s) 193
XspI CTAG 2 cut(s) 44, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.