Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

15596850 .. 15597783

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55658

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATTTTCAAACTTGGACGGGAGATATCAACTCAAAGTTTTTCCCCCAAAGAAGTTGGTGGCACATCCCAAGTCGCAAAAGCACCACTGTCGTCCTCCAGGGGAAGCCAAGTACCGTACACCACATCTTACGGTGACTCTGAGACGCTACTCAGAGAATTCTGCCTCAACTTTGAGGCAGAAGAGCAGAGTCTGAACATCACATGCATTCACTCCCAGCAAGGATGGATACGCGTTTATCAACGGGATCGAAATCATGTCCATGCCAACCAATCTTTACCACTCGGCAGCCGAAGGCGATGGGGCCAGGCTAGTTATCTCGGCAGTAGCGATAGCAGATATTATGTTGAAAACAACACCGCTCTGGAGATGATCTACCGAATCAACGTTGGTGGCAGCCCAGTATCTCCAAACGAAGACACCGGCACGTACCGCACCTGGAATCCAACAGACAAGTTCTACTTGAATGATCAAAGTAAAACTTTGAGCTCTGTATCACGAAGCAATATTACTCATCTTAATTTTGCAAGAATCCCTAACTACACAGCGCCCGAAGAGGTGAACCAAACGGGCCGGACAATGGGAGGAAACAACACCATCAACAACAGCTACAATCTCACCTGGGGATTTCGTATAGATCCCAACTTTTCTTACTTGGTGAGGCTCCATTTCTGTGAGATTGAATCGAATGTTACCAAGGCTGGAGATAGAATGTTTCAGATTTTCATAGCCAATTTAATTGCTGAACCGTATGCTGACATAATAAAAAAAAAAATAACAAATTACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

263

Amino Acids

29.9

Weight (kDa)

8.68

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	112 - 248	1.8e-16	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	362
AccII	CGCG	1 cut(s)	234
AciI	CCGC	2 cut(s)	360, 433
AclI	AACGTT	1 cut(s)	387
AclWI	GGATC	2 cut(s)	255, 632
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	3 cut(s)	114, 119, 431
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	10, 350, 466, 683
AjnI	CCWGG	4 cut(s)	98, 306, 437, 620
AluBI	AGCT	2 cut(s)	489, 609
AluI	AGCT	2 cut(s)	489, 609
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	255, 632
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	2 cut(s)	304, 571
ApeKI	GCWGC	2 cut(s)	288, 396
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	304, 571
AsuHPI	GGTGA	4 cut(s)	146, 571, 610, 670
BanII	GRGCYC	1 cut(s)	491
BarI	GAAGNNNNNNTAC	2 cut(s)	493, 525
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	300, 408
BccI	CCATC	3 cut(s)	219, 294, 605
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BciT130I	CCWGG	4 cut(s)	100, 308, 439, 622
BciVI	GTATCC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	289, 397
BlsI	GCNGC	2 cut(s)	290, 398
Bme1390I	CCNGG	4 cut(s)	100, 308, 439, 622
BmgT120I	GGNCC	2 cut(s)	304, 571
BmiI	GGNNCC	2 cut(s)	305, 665
BmrFI	CCNGG	4 cut(s)	100, 308, 439, 622
BmrI	ACTGGG	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	3 cut(s)	82, 386, 723
BsaAI	YACGTR	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	99, 621, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	4 cut(s)	100, 308, 439, 622
BseDI	CCNNGG	3 cut(s)	99, 621, 696
BseGI	GGATG	2 cut(s)	65, 230
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	2 cut(s)	132, 166
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	300, 408
BseYI	CCCAGC	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	306, 573
BsiHKAI	GWGCWC	1 cut(s)	491
BsiSI	CCGG	2 cut(s)	423, 574
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	306, 573
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	4 cut(s)	247, 372, 469, 637
BspACI	CCGC	2 cut(s)	360, 433
BspANI	GGCC	2 cut(s)	306, 573
BspCNI	CTCAG	2 cut(s)	133, 165
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	305, 665
BspPI	GGATC	2 cut(s)	255, 632
BspQI	GCTCTTC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	3 cut(s)	99, 621, 696
BssMI	GATC	4 cut(s)	247, 372, 469, 637
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	4 cut(s)	100, 308, 439, 622
Bst4CI	ACNGT	4 cut(s)	90, 117, 134, 750
Bst6I	CTCTTC	2 cut(s)	177, 549
BstBAI	YACGTR	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	141, 152
BstF5I	GGATG	2 cut(s)	65, 230
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	4 cut(s)	250, 375, 472, 640
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	247, 372, 469, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	4 cut(s)	100, 308, 439, 622
BstNSI	RCATGY	1 cut(s)	207
BstSCI	CCNGG	4 cut(s)	98, 306, 437, 620
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	300, 408
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	306, 573
BtgZI	GCGATG	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	65, 230
BtsIMutI	CAGTG	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	193
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	2 cut(s)	304, 571
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	3 cut(s)	113, 118, 430
CspCI	CAANNNNNGTGG	2 cut(s)	373, 408
CviAII	CATG	3 cut(s)	204, 257, 263
CviQI	GTAC	3 cut(s)	113, 118, 430
DdeI	CTNAG	2 cut(s)	141, 152
DpnI	GATC	4 cut(s)	249, 374, 471, 639
DpnII	GATC	4 cut(s)	247, 372, 469, 637
Eam1104I	CTCTTC	2 cut(s)	177, 549
EarI	CTCTTC	2 cut(s)	177, 549
Ecl136II	GAGCTC	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	491
Eco32I	GATATC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	4 cut(s)	98, 306, 437, 620
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	696
EcoT22I	ATGCAT	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	3 cut(s)	207, 260, 266
FalI	AAGNNNNNCTT	4 cut(s)	446, 478, 466, 498
FatI	CATG	3 cut(s)	203, 256, 262
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	289, 397
FokI	GGATG	2 cut(s)	52, 237
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	2 cut(s)	289, 397
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	289, 397
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	3 cut(s)	82, 386, 723
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	306, 573
HapII	CCGG	2 cut(s)	423, 574
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	207, 260, 266
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HinfI	GANTC	6 cut(s)	137, 190, 381, 442, 531, 683
HpaII	CCGG	2 cut(s)	423, 574
HphI	GGTGA	4 cut(s)	146, 571, 610, 670
Hpy166II	GTNNAC	2 cut(s)	120, 562
Hpy188I	TCNGA	4 cut(s)	142, 155, 195, 720
Hpy188III	TCNNGA	2 cut(s)	365, 498
Hpy8I	GTNNAC	2 cut(s)	120, 562
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	4 cut(s)	90, 117, 134, 750
HpyCH4IV	ACGT	2 cut(s)	387, 428
HpyCH4V	TGCA	2 cut(s)	207, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	2 cut(s)	141, 152
HpySE526I	ACGT	2 cut(s)	387, 428
Hsp92II	CATG	3 cut(s)	207, 260, 266
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	247, 372, 469, 637
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	669
Lsp1109I	GCAGC	2 cut(s)	300, 408
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	387, 428
MaeIII	GTNAC	2 cut(s)	134, 691
MalI	GATC	4 cut(s)	249, 374, 471, 639
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	4 cut(s)	247, 372, 469, 637
MboII	GAAGA	3 cut(s)	194, 428, 566
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	5 cut(s)	158, 520, 733, 738, 781
MluI	ACGCGT	1 cut(s)	232
MlyI	GAGTC	2 cut(s)	131, 199
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	6 cut(s)	106, 169, 176, 550, 578, 654
Mph1103I	ATGCAT	1 cut(s)	209
MseI	TTAA	2 cut(s)	519, 737
MslI	CAYNNNNRTG	2 cut(s)	261, 672
MspI	CCGG	2 cut(s)	423, 574
MspR9I	CCNGG	4 cut(s)	100, 308, 439, 622
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	4 cut(s)	100, 308, 439, 622
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	4 cut(s)	247, 372, 469, 637
NlaIII	CATG	3 cut(s)	207, 260, 266
NlaIV	GGNNCC	2 cut(s)	305, 665
NmeAIII	GCCGAG	2 cut(s)	264, 300
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	209
NspI	RCATGY	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	381, 442, 531, 683
PkrI	GCNGC	2 cut(s)	290, 398
PleI	GAGTC	2 cut(s)	131, 198
PpsI	GAGTC	2 cut(s)	131, 198
Ppu21I	YACGTR	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	491
Psp1406I	AACGTT	1 cut(s)	387
Psp6I	CCWGG	4 cut(s)	98, 306, 437, 620
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	4 cut(s)	98, 306, 437, 620
PspN4I	GGNNCC	2 cut(s)	305, 665
PspPI	GGNCC	2 cut(s)	304, 571
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	3 cut(s)	114, 119, 431
RsaNI	GTAC	3 cut(s)	113, 118, 430
RseI	CAYNNNNRTG	2 cut(s)	261, 672
SacI	GAGCTC	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	519, 737
SatI	GCNGC	2 cut(s)	289, 397
Sau3AI	GATC	4 cut(s)	247, 372, 469, 637
Sau96I	GGNCC	2 cut(s)	304, 571
SchI	GAGTC	2 cut(s)	131, 199
ScrFI	CCNGG	4 cut(s)	100, 308, 439, 622
SduI	GDGCHC	1 cut(s)	491
SetI	ASST	7 cut(s)	390, 431, 440, 491, 561, 611, 623
SmiMI	CAYNNNNRTG	2 cut(s)	261, 672
Sse9I	AATT	5 cut(s)	158, 520, 733, 738, 781
SsiI	CCGC	2 cut(s)	360, 433
SspI	AATATT	1 cut(s)	508
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	491
StyD4I	CCNGG	4 cut(s)	98, 306, 437, 620
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	4 cut(s)	90, 117, 134, 750
TaiI	ACGT	2 cut(s)	390, 431
TaqI	TCGA	2 cut(s)	250, 686
TasI	AATT	5 cut(s)	158, 520, 733, 738, 781
TfiI	GAWTC	4 cut(s)	381, 442, 531, 683
Tru1I	TTAA	2 cut(s)	519, 737
Tru9I	TTAA	2 cut(s)	519, 737
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	288, 396
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	715
TspRI	CASTG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.