RchiOBHm_Chr1g0328721

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
18120394 .. 18120744
351 bp
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UTR
Exon/CDS
Intron
PRQ55810

Sequence Viewer

Length: 351 bp
ATGTGTGTGTGTGTAGGTCATGACTTCAATCACTTAAACCTTATGAAATTCACTACTATTGCTCACGTTTATACCGCTAATTCATGCAACGGTTACATGTCATCCGAATACGCACGTTATGGTAATTTCTCTAAGAAATTAGATGTCTTTAGCTTTGAAGTATTGTTAGTAGAGATAGTCAGTGGAAAGAGGAATGCCGCATTCCATCATTTTGAACATTCACTAGCTCTTGGTCCTTCTCCATATAGCATTTCTTCCAACTGTGCAGACACCATTAGTATCCAAGAAGGTCGATATAGATTCAATTTCTATTGGTGGGAGAGGCGCCTCTTGCAAAATACACCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

116

Amino Acids

13.49

Weight (kDa)

7.73

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 324
AciI CCGC 2 cut(s) 75, 198
AcsI RAATTY 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 4 cut(s) 28, 158, 215, 304
AleI CACNNNNGTG 1 cut(s) 346
AluBI AGCT 2 cut(s) 153, 227
AluI AGCT 2 cut(s) 153, 227
ApoI RAATTY 1 cut(s) 47
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 324
BccI CCATC 1 cut(s) 213
BciVI GTATCC 1 cut(s) 290
BfaI CTAG 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 328
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 324
BsmI GAATGC 2 cut(s) 199, 200
BspACI CCGC 2 cut(s) 75, 198
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 344
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 92, 263
BstACI GRCGYC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 187
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 3 cut(s) 20, 84, 97
CviJI RGCY 2 cut(s) 153, 227
CviKI_1 RGCY 2 cut(s) 153, 227
DdeI CTNAG 1 cut(s) 132
DinI GGCGCC 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 344
EgeI GGCGCC 1 cut(s) 326
EheI GGCGCC 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 3 cut(s) 23, 87, 100
FaiI YATR 9 cut(s) 21, 44, 72, 85, 98, 120, 244, 246, 297
FatI CATG 3 cut(s) 19, 83, 96
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 328
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 3 cut(s) 23, 87, 100
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HinfI GANTC 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 246, 281
HpyCH4III ACNGT 2 cut(s) 92, 263
HpyCH4IV ACGT 2 cut(s) 66, 115
HpyCH4V TGCA 3 cut(s) 87, 266, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 66, 115
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 3 cut(s) 23, 87, 100
HspAI GCGC 1 cut(s) 325
KasI GGCGCC 1 cut(s) 324
MaeI CTAG 1 cut(s) 224
MaeII ACGT 2 cut(s) 66, 115
MaeIII GTNAC 1 cut(s) 92
MboII GAAGA 1 cut(s) 246
MluCI AATT 5 cut(s) 47, 79, 124, 137, 304
Mly113I GGCGCC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 3 cut(s) 183, 315, 338
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 346
Mva1269I GAATGC 2 cut(s) 199, 200
MwoI GCNNNNNNNGC 1 cut(s) 331
NarI GGCGCC 1 cut(s) 325
NlaIII CATG 3 cut(s) 23, 87, 100
NlaIV GGNNCC 1 cut(s) 326
NspI RCATGY 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 346
PagI TCATGA 1 cut(s) 19
PciI ACATGT 1 cut(s) 96
PctI GAATGC 2 cut(s) 199, 200
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 328
PscI ACATGT 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 233
SetI ASST 8 cut(s) 19, 42, 69, 118, 155, 229, 292, 346
SfoI GGCGCC 1 cut(s) 326
SgeI CNNG 9 cut(s) 32, 77, 96, 109, 126, 236, 242, 296, 343
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 346
Sse9I AATT 5 cut(s) 47, 79, 124, 137, 304
SsiI CCGC 2 cut(s) 75, 198
SspDI GGCGCC 1 cut(s) 324
SspMI CTAG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 92, 263
TaiI ACGT 2 cut(s) 69, 118
TaqI TCGA 1 cut(s) 292
TasI AATT 5 cut(s) 47, 79, 124, 137, 304
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 59, 72
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 100
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.