RchiOBHm_Chr1g0342171

Receptor-like protein 12

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
34134675 .. 34134953
279 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56882

Sequence Viewer

Length: 279 bp
ATGAGATCAGAATCAGGAGAGGCTGAAAATAACCTCAATTACTCTCAAGTTCCTAATGTCATTAGAAATTTTTCGGAGCTCACGTATCTCAACCTCTCTGGCTCTTCCTTTTCTGGTCAAATCCCATTTGAAGTTTGGCAATTGTCCAAGCTATTAATCCTAGACCTTTCAAGGAACCACTTTAATGATCCAATCTCTGCTTTGTTGGCAAACCTTACCGAGCTGGCTATTCTTTCAGTTTGTGAGAACCAATTAACTGGTCCATCCCATCTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.28

Weight (kDa)

4.89

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 131, 171
AluBI AGCT 3 cut(s) 79, 151, 223
AluI AGCT 3 cut(s) 79, 151, 223
Alw21I GWGCWC 1 cut(s) 81
AlwI GGATC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 67
AseI ATTAAT 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 2 cut(s) 271, 276
BfaI CTAG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 10
BseGI GGATG 1 cut(s) 263
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 5, 187
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 262
BssMI GATC 2 cut(s) 5, 187
Bst6I CTCTTC 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 1 cut(s) 263
BstKTI GATC 2 cut(s) 8, 190
BstMBI GATC 2 cut(s) 5, 187
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 260
CviJI RGCY 6 cut(s) 23, 79, 102, 151, 223, 227
CviKI_1 RGCY 6 cut(s) 23, 79, 102, 151, 223, 227
DpnI GATC 2 cut(s) 7, 189
DpnII GATC 2 cut(s) 5, 187
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 81
FokI GGATG 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 81
FspBI CTAG 1 cut(s) 161
HinfI GANTC 1 cut(s) 11
Hpy188I TCNGA 2 cut(s) 10, 76
Hpy188III TCNNGA 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 83
Kzo9I GATC 2 cut(s) 5, 187
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 84, 99, 209, 243
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 83
MalI GATC 2 cut(s) 7, 189
MboI GATC 2 cut(s) 5, 187
MboII GAAGA 2 cut(s) 96, 263
MfeI CAATTG 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 4 cut(s) 37, 67, 140, 251
MnlI CCTC 3 cut(s) 13, 44, 104
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 3 cut(s) 155, 183, 254
MslI CAYNNNNRTG 1 cut(s) 183
MunI CAATTG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 2 cut(s) 5, 187
NlaIV GGNNCC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 11
Ppu21I YACGTR 1 cut(s) 84
PshBI ATTAAT 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 155, 183, 254
Sau3AI GATC 2 cut(s) 5, 187
Sau96I GGNCC 1 cut(s) 260
SduI GDGCHC 1 cut(s) 81
SetI ASST 8 cut(s) 36, 81, 86, 96, 153, 168, 216, 225
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 4 cut(s) 37, 67, 140, 251
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 81
TaiI ACGT 1 cut(s) 86
TasI AATT 4 cut(s) 37, 67, 140, 251
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 155, 183, 254
Tru9I TTAA 3 cut(s) 155, 183, 254
VpaK11BI GGWCC 1 cut(s) 260
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.