Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37384237 .. 37385358

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57140

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGACCAAACTTTCTCATTTGAGGTCGAGTTTGCAAAGTTATAACATAAGACAAGTGAGTGAGGGTGAAAGTATGGCTTCTGCTTTTAAGAGGCAACGAGATAGGAGGCTAACTTATGCTCATGAAGTTGAAAGTTATATTGTTGGGTTAGAGGAAAACACGGATAGACTGGTGAAAGAGTTGGTGGAAATTAAGTTTCCTTTGTTTATTAGTTCGATTGGGCTTGTCCATCGGACTTATGTTGTGGTTCTATTTTCAGCCTTTTGGGCTTGCTTTGGGGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

95

Amino Acids

10.96

Weight (kDa)

8.89

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	77, 184
BccI	CCATC	1 cut(s)	237
BglI	GCCNNNNNGGC	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	271
CciI	TCATGA	1 cut(s)	121
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	5 cut(s)	77, 109, 223, 260, 269
CviKI_1	RGCY	5 cut(s)	77, 109, 223, 260, 269
FaeI	CATG	1 cut(s)	125
FaiI	YATR	7 cut(s)	42, 47, 74, 117, 123, 138, 240
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	1 cut(s)	121
Hin1II	CATG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	77, 184
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	125
LpnPI	CCDG	1 cut(s)	155
MluCI	AATT	1 cut(s)	189
MnlI	CCTC	5 cut(s)	15, 55, 84, 99, 145
MseI	TTAA	3 cut(s)	87, 192, 286
MwoI	GCNNNNNNNGC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	125
PagI	TCATGA	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	87, 192, 286
SetI	ASST	1 cut(s)	26
SgeI	CNNG	8 cut(s)	39, 65, 110, 134, 172, 182, 236, 282
Sse9I	AATT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	26, 215
TasI	AATT	1 cut(s)	189
Tru1I	TTAA	3 cut(s)	87, 192, 286
Tru9I	TTAA	3 cut(s)	87, 192, 286
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.