RchiOBHm_Chr1g0346451

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
38888799 .. 38889161
363 bp
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UTR
Exon/CDS
Intron
PRQ57272

Sequence Viewer

Length: 363 bp
ATGGGTGGGATTGGAAAGACCACCCTTGCCCAGTTTGTATACAATGATGTTAGAGTGAAGCAACATTTTCACCTCCAAGCATGGGTTTGCGTTTCAAAAGAATTTGATGCCCTTAGGATCTCGCAACACATTTATGAGTCCCTCACCTCAAAAGCTTGCCAAATCACGAACCTAGATCTGCTTCAATCAAACCTGCATGACAATTTGACGGGGAAAAGGTTCTTTGTTCTTGATGACATCTGGAACAAAAATTATAACCAGTTGGAATTCTTAAGACGTCCCCTTGAGTTTGGAGCACACGGAAGCAAGATTCTTATCACAACACGAGATGAAGATGTTTCACGTATGAATTATGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

120

Amino Acids

13.95

Weight (kDa)

6.96

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 116 3.5e-25 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AatII GACGTC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 39
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 101, 266
AcyI GRCGYC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 82
AflII CTTAAG 1 cut(s) 271
AgsI TTSAA 2 cut(s) 96, 185
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw21I GWGCWC 1 cut(s) 298
AlwI GGATC 1 cut(s) 125
ApoI RAATTY 2 cut(s) 101, 266
Asp700I GAANNNNTTC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 62, 136
AxyI CCTNAGG 1 cut(s) 113
BauI CACGAG 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 1 cut(s) 350
BfaI CTAG 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 201
BglII AGATCT 1 cut(s) 175
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 97
BmuI ACTGGG 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 31, 259
Bse21I CCTNAGG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 314
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 31, 259
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 2 cut(s) 124, 264
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 2 cut(s) 124, 264
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 2 cut(s) 117, 175
BspMI ACCTGC 1 cut(s) 201
BspPI GGATC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 31, 259
BssMI GATC 2 cut(s) 117, 175
BssNAI GTATAC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 277
BssSI CACGAG 1 cut(s) 324
Bst1107I GTATAC 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 324
BstACI GRCGYC 1 cut(s) 277
BstAFI CTTAAG 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 113
BstKTI GATC 2 cut(s) 120, 178
BstMBI GATC 2 cut(s) 117, 175
BstX2I RGATCY 2 cut(s) 117, 175
BstYI RGATCY 2 cut(s) 117, 175
BstZ17I GTATAC 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 113
BveI ACCTGC 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 157
CviAII CATG 2 cut(s) 81, 197
CviJI RGCY 1 cut(s) 155
CviKI_1 RGCY 1 cut(s) 155
DdeI CTNAG 1 cut(s) 113
DpnI GATC 2 cut(s) 119, 177
DpnII GATC 2 cut(s) 117, 175
Eco81I CCTNAGG 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 266
FaeI CATG 2 cut(s) 84, 200
FaiI YATR 7 cut(s) 40, 82, 135, 198, 255, 347, 354
FaqI GGGAC 2 cut(s) 124, 264
FatI CATG 2 cut(s) 80, 196
FblI GTMKAC 1 cut(s) 39
FspBI CTAG 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 2 cut(s) 84, 200
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 2 cut(s) 137, 310
HphI GGTGA 2 cut(s) 62, 136
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 3 cut(s) 166, 230, 241
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4IV ACGT 2 cut(s) 277, 343
HpyCH4V TGCA 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 277, 343
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 2 cut(s) 84, 200
Kzo9I GATC 2 cut(s) 117, 175
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 4 cut(s) 44, 206, 226, 272
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 173
MaeII ACGT 2 cut(s) 277, 343
MalI GATC 2 cut(s) 119, 177
MboI GATC 2 cut(s) 117, 175
MboII GAAGA 1 cut(s) 344
MflI RGATCY 2 cut(s) 117, 175
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 5 cut(s) 101, 202, 250, 266, 349
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 3 cut(s) 83, 152, 157
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 271
NdeII GATC 2 cut(s) 117, 175
NlaIII CATG 2 cut(s) 84, 200
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 310
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 344
PsiI TTATAA 1 cut(s) 255
PsuI RGATCY 2 cut(s) 117, 175
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 272
Sau3AI GATC 2 cut(s) 117, 175
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 298
SetI ASST 8 cut(s) 75, 149, 157, 174, 195, 221, 280, 346
SfaNI GCATC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 271, 284
SmoI CTYRAG 2 cut(s) 271, 284
Sse9I AATT 5 cut(s) 101, 202, 250, 266, 349
SspMI CTAG 1 cut(s) 173
TaiI ACGT 2 cut(s) 280, 346
TasI AATT 5 cut(s) 101, 202, 250, 266, 349
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 345, 362
TspGWI ACGGA 1 cut(s) 315
Vha464I CTTAAG 1 cut(s) 271
XapI RAATTY 2 cut(s) 101, 266
XmiI GTMKAC 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 1 cut(s) 173
ZraI GACGTC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.