RchiOBHm_Chr1g0355451

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
48125906 .. 48126332
427 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58092

Sequence Viewer

Length: 303 bp
ATGCTCGATATTGTCATTGATATTGCTCATGCACTGGATTATCTTCATAATCGTTGTGAACAACCAATTGTTCAATGTGATCTCAAGCCAAGCAATGTTCTTTTGGACAGTGAGCTGACCGGACATGTGTCCGACTTAGGACTGGCAAGATTTCTCTCAAAACTAACCAGTACTGCTTCTGCAAATCAATCAAGTTCGGGAGCAGAGGATCAATTGGTTATGCTGCTCCAGGTATCCACAAATGGAGATGTCTACAGCTTAGGCATTCTCTTGTTACTTGTTAGAAATGTTTATGGGGAATAG

Protein Analysis

100

Amino Acids

10.84

Weight (kDa)

4.58

Isoelectric Point (pI)

24.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 91 4.1e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 4 - 92 5.1e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AclWI GGATC 1 cut(s) 216
AfaI GTAC 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 2 cut(s) 115, 258
AluI AGCT 2 cut(s) 115, 258
AlwI GGATC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 230
BciVI GTATCC 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 253
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmcAI AGTACT 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 230
BoxI GACNNNNGTC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 39, 147, 168
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 230
BseMI GCAATG 1 cut(s) 100
BseNI ACTGG 3 cut(s) 39, 147, 168
BseXI GCAGC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 120
BsmI GAATGC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 79, 208
BspPI GGATC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 3 cut(s) 39, 147, 168
BssMI GATC 2 cut(s) 79, 208
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 136, 259
BstKTI GATC 2 cut(s) 82, 211
BstMBI GATC 2 cut(s) 79, 208
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 128
BstPAI GACNNNNGTC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 210
BsuI GTATCC 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 32, 115
Csp6I GTAC 1 cut(s) 171
CviAII CATG 2 cut(s) 29, 125
CviJI RGCY 3 cut(s) 88, 115, 258
CviKI_1 RGCY 3 cut(s) 88, 115, 258
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 2 cut(s) 136, 259
DpnI GATC 2 cut(s) 81, 210
DpnII GATC 2 cut(s) 79, 208
EcoRII CCWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 32, 128
FaiI YATR 5 cut(s) 30, 48, 126, 221, 294
FatI CATG 2 cut(s) 28, 124
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 212
HapII CCGG 1 cut(s) 120
Hin1II CATG 2 cut(s) 32, 128
HpaII CCGG 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 59, 253
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 2 cut(s) 59, 253
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 32, 182
HpyF3I CTNAG 2 cut(s) 136, 259
Hsp92II CATG 2 cut(s) 32, 128
Kzo9I GATC 2 cut(s) 79, 208
LmnI GCTCC 2 cut(s) 200, 231
LpnPI CCDG 6 cut(s) 20, 128, 133, 181, 215, 242
Lsp1109I GCAGC 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 273
MalI GATC 2 cut(s) 81, 210
MboI GATC 2 cut(s) 79, 208
MboII GAAGA 1 cut(s) 35
MfeI CAATTG 2 cut(s) 66, 212
MluCI AATT 2 cut(s) 66, 212
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 1 cut(s) 199
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 2 cut(s) 66, 212
Mva1269I GAATGC 1 cut(s) 264
MvaI CCWGG 1 cut(s) 230
NdeII GATC 2 cut(s) 79, 208
NlaIII CATG 2 cut(s) 32, 128
NspI RCATGY 1 cut(s) 128
PciI ACATGT 1 cut(s) 124
PctI GAATGC 1 cut(s) 264
PkrI GCNGC 1 cut(s) 225
PscI ACATGT 1 cut(s) 124
PshAI GACNNNNGTC 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 2 cut(s) 79, 208
ScaI AGTACT 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 230
SetI ASST 3 cut(s) 117, 234, 260
SfcI CTRYAG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 66, 212
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 6
TasI AATT 2 cut(s) 66, 212
TatI WGTACW 1 cut(s) 170
TscAI CASTG 2 cut(s) 39, 115
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 2 cut(s) 39, 115
XceI RCATGY 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.