Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

48296693 .. 48297037

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58116

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTATCAGGAGAACTTCCTATTAGCCTAGGCAATTGCCAGAGCTTAGAAGTCCTATATTTGCAAGGAAACTTGTTCAACGGGCACGTCCCTTCATCTATGAAGGAATTGAGAGGGATTCGAGATTTAGACCTCTCTCGCAACGATTTGTCAGGATATATTCCACAGTTTTTCGAGCGCTTTGGAAACTTGGAGAATCTGAACCTATCCTTCAATCAATTTTGGGGAACAGTACCAACTGGTGGTATTTTTAAGAATGCAAGTGCGACTTTGGTTGCTGGAAATGCTAGACTCTGCGGAGGTATGGCTAGCTTCTTCTCCAACTATATTAGCACCTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

114

Amino Acids

12.55

Weight (kDa)

5.66

Isoelectric Point (pI)

20.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	15 - 74	6.6e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	242
AciI	CCGC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	234
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	79, 214
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	2 cut(s)	45, 312
AluI	AGCT	2 cut(s)	45, 312
Aor51HI	AGCGCT	1 cut(s)	179
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	180
AsuNHI	GCTAGC	1 cut(s)	308
AvrII	CCTAGG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	87
BfaI	CTAG	3 cut(s)	29, 288, 309
BfoI	RGCGCY	1 cut(s)	181
BlnI	CCTAGG	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	88
BmtI	GCTAGC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	297
BspOI	GCTAGC	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	168, 232
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	233
CviJI	RGCY	4 cut(s)	27, 45, 308, 312
CviKI_1	RGCY	4 cut(s)	27, 45, 308, 312
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	28
Eco47III	AGCGCT	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaiI	YATR	5 cut(s)	58, 101, 159, 305, 327
FalI	AAGNNNNNCTT	2 cut(s)	253, 285
FaqI	GGGAC	1 cut(s)	74
FspBI	CTAG	3 cut(s)	29, 288, 309
GlaI	GCGC	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	181
HhaI	GCGC	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	118, 196, 291
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	9, 122, 153
HpyAV	CCTTC	3 cut(s)	97, 102, 220
HpyCH4III	ACNGT	2 cut(s)	168, 232
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	64, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	87
HspAI	GCGC	1 cut(s)	178
LpnPI	CCDG	4 cut(s)	53, 138, 225, 264
MaeI	CTAG	3 cut(s)	29, 288, 309
MaeII	ACGT	1 cut(s)	87
MboII	GAAGA	1 cut(s)	307
MfeI	CAATTG	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	34, 107, 218
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	3 cut(s)	107, 143, 293
MseI	TTAA	2 cut(s)	252, 343
MunI	CAATTG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	284
NheI	GCTAGC	1 cut(s)	308
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	118, 196
PflMI	CCANNNNNTGG	1 cut(s)	242
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	252, 343
SchI	GAGTC	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	7 cut(s)	47, 90, 135, 207, 304, 314, 338
Sse9I	AATT	3 cut(s)	34, 107, 218
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	3 cut(s)	29, 288, 309
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	168, 232
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	121, 174
TasI	AATT	3 cut(s)	34, 107, 218
TfiI	GAWTC	2 cut(s)	118, 196
Tru1I	TTAA	2 cut(s)	252, 343
Tru9I	TTAA	2 cut(s)	252, 343
TspDTI	ATGAA	2 cut(s)	84, 116
Van91I	CCANNNNNTGG	1 cut(s)	242
XmaJI	CCTAGG	1 cut(s)	28
XspI	CTAG	3 cut(s)	29, 288, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.