Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

48955835 .. 48956580

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTTGCTTCAAATCAATCAAGCTCTCTTGGAGTTAGAGGATCAGTTGGTTATGCTGCACCAGAGTATGGTATGTGAAGTGAGGTGTCAACATATGGGGATGTCTATAGCTAGCTTTGGCATTCTCTTGCTAGAAATGTTTACAGGGGAGAGGCCCACTGATCACATGTTTAGTGACAGCTTGAATCTTCATAATTTTGTAAAGATGGCTCTCCCTGAACGTGTTGCATATATTAGAGATAATGATTCACTACTTTCGTCAAGGAGGCATCACCAATATTGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

95

Amino Acids

11.11

Weight (kDa)

6.01

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AclWI	GGATC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	2 cut(s)	165, 220
AgsI	TTSAA	2 cut(s)	11, 184
AluBI	AGCT	4 cut(s)	23, 110, 114, 180
AluI	AGCT	4 cut(s)	23, 110, 114, 180
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	263
AsuNHI	GCTAGC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	160
BfaI	CTAG	2 cut(s)	111, 131
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	153
BmsI	GCATC	1 cut(s)	277
BmtI	GCTAGC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	40, 160
BspANI	GGCC	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	48
BssMI	GATC	2 cut(s)	40, 160
BstC8I	GCNNGC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	43, 163
BstMBI	GATC	2 cut(s)	40, 160
BstNSI	RCATGY	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	153
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	6 cut(s)	23, 110, 114, 154, 180, 209
CviKI_1	RGCY	6 cut(s)	23, 110, 114, 154, 180, 209
DpnI	GATC	2 cut(s)	42, 162
DpnII	GATC	2 cut(s)	40, 160
FaeI	CATG	1 cut(s)	169
FatI	CATG	1 cut(s)	165
FauNDI	CATATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	111, 131
GluI	GCNGC	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	89
HindII	GTYRAC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	184, 245
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	2 cut(s)	89, 141
Hpy8I	GTNNAC	2 cut(s)	89, 141
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	58, 227
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	40, 160
LpnPI	CCDG	3 cut(s)	74, 129, 228
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	111, 131
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	42, 162
MboI	GATC	2 cut(s)	40, 160
MboII	GAAGA	1 cut(s)	179
MluCI	AATT	1 cut(s)	193
MnlI	CCTC	4 cut(s)	31, 75, 144, 258
Mva1269I	GAATGC	1 cut(s)	120
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	2 cut(s)	40, 160
NheI	GCTAGC	1 cut(s)	110
NlaIII	CATG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	169
PciI	ACATGT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	184, 245
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	57
PscI	ACATGT	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	40, 160
Sau96I	GGNCC	1 cut(s)	153
SetI	ASST	6 cut(s)	25, 86, 112, 116, 182, 223
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	193
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	2 cut(s)	111, 131
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	283
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	184, 245
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	67
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	2 cut(s)	111, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.