RchiOBHm_Chr1g0356871

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
49276436 .. 49276900
465 bp
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UTR
Exon/CDS
Intron
PRQ58218

Sequence Viewer

Length: 465 bp
ATGCAGAGCAGACATCTTCATAGGGATATTAAATCAGCAAATGTACTTTTGGACGACGATTTTAACACTAAGCTCGGTGATTTTGGGATTGCTAAGCTCTTGGATCCTCACTTGAGGACTAGGACAACCGGGGTGGCAGGGACTTTTGGATACATGGCCCCGGAATATGCTTTTCAAGGCAGAGCAAGCAAGGAATCAGACATGTTCAGTTTTGGAGTTGTGGTTTGGAAATTGCTTGTGGAAGGCGAACTTACCAAGATGGAGAATATCACGTGCCACTTTTTGAGTGGGTTTGGCAATCGTACCTTGCAGGAAATCTTCTCCATGTACCTTGCAGGAAATCTTCTCCTAGATGAGAGATTGGATATGGAGTTTGATCCAAGTGAAATGAAGTGCTTGCTAATTGTGGGATTATGGTGCACGCACCCAGCAACAAGGAAAGGCCTAAAGCAGGACAAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

154

Amino Acids

17.44

Weight (kDa)

6.19

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 4 - 85 1.9e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 6 - 150 1.3e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 98, 111, 371
AcvI CACGTG 1 cut(s) 273
AfaI GTAC 3 cut(s) 45, 304, 329
AfiI CCNNNNNNNGG 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 2 cut(s) 73, 97
AluI AGCT 2 cut(s) 73, 97
Alw21I GWGCWC 1 cut(s) 422
Alw44I GTGCAC 1 cut(s) 418
AlwI GGATC 3 cut(s) 98, 111, 371
AoxI GGCC 2 cut(s) 156, 442
ApaLI GTGCAC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 2 cut(s) 130, 161
AsuHPI GGTGA 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 422
BamHI GGATCC 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 422
BccI CCATC 1 cut(s) 253
BciVI GTATCC 1 cut(s) 143
BcnI CCSGG 2 cut(s) 130, 161
BfaI CTAG 2 cut(s) 120, 350
BfuI GTATCC 1 cut(s) 143
BlpI GCTNAGC 1 cut(s) 93
Bme1390I CCNGG 2 cut(s) 130, 161
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 105, 159
BmrFI CCNGG 2 cut(s) 130, 161
Bpu1102I GCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 133
BpuMI CCSGG 2 cut(s) 130, 161
BsaAI YACGTR 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 129, 159
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 1 cut(s) 451
BseDI CCNNGG 2 cut(s) 129, 159
BseLI CCNNNNNNNGG 1 cut(s) 451
BseSI GKGCMC 1 cut(s) 422
BseYI CCCAGC 1 cut(s) 427
BshFI GGCC 2 cut(s) 158, 444
BsiHKAI GWGCWC 1 cut(s) 422
BsiSI CCGG 2 cut(s) 129, 161
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 158, 444
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 2 cut(s) 103, 376
Bsp1720I GCTNAGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 158, 444
BspHI TCATGA 1 cut(s) 461
BspLI GGNNCC 2 cut(s) 105, 159
BspPI GGATC 3 cut(s) 98, 111, 371
BssECI CCNNGG 2 cut(s) 129, 159
BssMI GATC 2 cut(s) 103, 376
BstBAI YACGTR 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 187, 398, 422
BstDEI CTNAG 2 cut(s) 69, 93
BstENI CCTNNNNNAGG 1 cut(s) 449
BstKTI GATC 2 cut(s) 106, 379
BstMBI GATC 2 cut(s) 103, 376
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 128, 159
BstSLI GKGCMC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuI GTATCC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 158, 444
Cac8I GCNNGC 3 cut(s) 187, 398, 422
CciI TCATGA 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 3 cut(s) 44, 303, 328
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 4 cut(s) 154, 202, 325, 462
CviJI RGCY 4 cut(s) 73, 97, 158, 444
CviKI_1 RGCY 4 cut(s) 73, 97, 158, 444
CviQI GTAC 3 cut(s) 44, 303, 328
DdeI CTNAG 2 cut(s) 69, 93
DpnI GATC 2 cut(s) 105, 378
DpnII GATC 2 cut(s) 103, 376
Eco147I AGGCCT 1 cut(s) 444
Eco72I CACGTG 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 449
FaeI CATG 4 cut(s) 157, 205, 328, 465
FaiI YATR 8 cut(s) 21, 155, 168, 203, 326, 368, 415, 463
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 153, 201, 324, 461
FspBI CTAG 2 cut(s) 120, 350
GsaI CCCAGC 1 cut(s) 431
HaeIII GGCC 2 cut(s) 158, 444
HapII CCGG 2 cut(s) 129, 161
Hin1II CATG 4 cut(s) 157, 205, 328, 465
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 129, 161
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 1 cut(s) 462
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 4, 310, 335, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 2 cut(s) 69, 93
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 4 cut(s) 157, 205, 328, 465
Kzo9I GATC 2 cut(s) 103, 376
LpnPI CCDG 7 cut(s) 123, 142, 174, 296, 321, 437, 441
MaeI CTAG 2 cut(s) 120, 350
MaeII ACGT 1 cut(s) 272
MalI GATC 2 cut(s) 105, 378
MboI GATC 2 cut(s) 103, 376
MboII GAAGA 3 cut(s) 8, 310, 335
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 2 cut(s) 230, 402
MnlI CCTC 2 cut(s) 108, 117
MseI TTAA 2 cut(s) 30, 63
MspI CCGG 2 cut(s) 129, 161
MspR9I CCNGG 2 cut(s) 130, 161
MwoI GCNNNNNNNGC 1 cut(s) 186
NciI CCSGG 2 cut(s) 130, 161
NdeII GATC 2 cut(s) 103, 376
NlaIII CATG 4 cut(s) 157, 205, 328, 465
NlaIV GGNNCC 2 cut(s) 105, 159
NspI RCATGY 1 cut(s) 205
PagI TCATGA 1 cut(s) 461
PceI AGGCCT 1 cut(s) 444
PciI ACATGT 1 cut(s) 201
PfeI GAWTC 1 cut(s) 194
PmaCI CACGTG 1 cut(s) 273
PmlI CACGTG 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 273
PscI ACATGT 1 cut(s) 201
PspCI CACGTG 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 105, 159
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 3 cut(s) 45, 304, 329
RsaNI GTAC 3 cut(s) 44, 303, 328
SaqAI TTAA 2 cut(s) 30, 63
Sau3AI GATC 2 cut(s) 103, 376
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 130, 161
SduI GDGCHC 1 cut(s) 422
SetI ASST 5 cut(s) 75, 99, 275, 308, 333
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 2 cut(s) 230, 402
SseBI AGGCCT 1 cut(s) 444
SspMI CTAG 2 cut(s) 120, 350
StuI AGGCCT 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 128, 159
TaiI ACGT 1 cut(s) 275
TasI AATT 2 cut(s) 230, 402
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 30, 63
Tru9I TTAA 2 cut(s) 30, 63
TspDTI ATGAA 2 cut(s) 8, 404
VneI GTGCAC 1 cut(s) 418
XagI CCTNNNNNAGG 1 cut(s) 449
XceI RCATGY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XspI CTAG 2 cut(s) 120, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.