RchiOBHm_Chr1g0357541

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Reverse (-)
49878491 .. 49879464
974 bp
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UTR
Exon/CDS
Intron
PRQ58276

Sequence Viewer

Length: 387 bp
ATGACCAAGTTTTGGATTGGCGAGGAAACAGAACTGAAGAAAGAGATGTGCTTAATTGAGAAGCTCCAACCTTACCTGAACTTGGAAAGGCTTAGAATTAGAGGTTATGGAGGCAAAATGTTTCCAGGTTCTGAATTCTATTACGGTGACGACAATACTTCTAGTGTGAAAAAACCATTTAGATCTCTCCAGTCTTTAAAATTCAACAATATGAGTGGATGGAAATATTGGTCTTGTGGTGGGGGTGAACATAATGAAGGTACTCTTGTGTTTTTGTGGGTAGAAAATTGCCGAGAATTGGAATGTTTTCCGGAAGGGGGATTCCCGTCAAAGTTAAACTCACTTGTCATCAGGGAGTGTAAAAAACTGAATGCAAAGAGTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.85

Weight (kDa)

8.58

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 10 - 76 5.2e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 12
AccIII TCCGGA 1 cut(s) 310
AcsI RAATTY 2 cut(s) 134, 200
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 4 cut(s) 12, 82, 298, 317
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 310
ApoI RAATTY 2 cut(s) 134, 200
Asp700I GAANNNNTTC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 158, 257
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BccI CCATC 1 cut(s) 213
BciT130I CCWGG 1 cut(s) 126
BfaI CTAG 1 cut(s) 162
BglII AGATCT 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 82, 298, 317
Bse1I ACTGG 1 cut(s) 190
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 4 cut(s) 12, 82, 298, 317
BseNI ACTGG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 311
BslI CCNNNNNNNGG 4 cut(s) 12, 82, 298, 317
BsmI GAATGC 1 cut(s) 376
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 1 cut(s) 182
BspEI TCCGGA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 190
BssMI GATC 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 1 cut(s) 185
BstMBI GATC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BtsCI GGATG 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 131
Csp6I GTAC 1 cut(s) 261
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviJI RGCY 2 cut(s) 64, 91
CviKI_1 RGCY 2 cut(s) 64, 91
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
DraI TTTAAA 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 124
FaiI YATR 3 cut(s) 108, 212, 252
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FokI GGATG 1 cut(s) 231
FspBI CTAG 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 311
HinfI GANTC 1 cut(s) 321
HpaII CCGG 1 cut(s) 311
HphI GGTGA 2 cut(s) 158, 257
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 251, 308
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 6 cut(s) 89, 111, 138, 203, 324, 337
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 184
MboI GATC 1 cut(s) 182
MboII GAAGA 1 cut(s) 49
MflI RGATCY 1 cut(s) 182
MluCI AATT 6 cut(s) 54, 96, 134, 200, 286, 296
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 3 cut(s) 16, 95, 104
MroI TCCGGA 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 3 cut(s) 53, 197, 335
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 1 cut(s) 126
NdeII GATC 1 cut(s) 182
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 146
PctI GAATGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 53, 197, 335
Sau3AI GATC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 126
SetI ASST 6 cut(s) 66, 73, 78, 106, 130, 262
Sse9I AATT 6 cut(s) 54, 96, 134, 200, 286, 296
SspI AATATT 1 cut(s) 227
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 146
TasI AATT 6 cut(s) 54, 96, 134, 200, 286, 296
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 3 cut(s) 53, 197, 335
Tru9I TTAA 3 cut(s) 53, 197, 335
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 12
XapI RAATTY 2 cut(s) 134, 200
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.