Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

50169502 .. 50170336

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58314

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGCTTCAACATTGTGCAGGTTTGCCATTAGCTATTATCGTGCTCGCAGGACTACTATCTAAAAAAGACACAATTGATGAGTGGCAAACTGTGCATAAGAATGTTGATGTATATATAAGGAGAGGTACAGACCTTGAACGACAATACAAAGGTCAAAAATATGAAGGTGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

58

Amino Acids

6.57

Weight (kDa)

7.9

Isoelectric Point (pI)

17.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	8, 137
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw21I	GWGCWC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	173
BspMI	ACCTGC	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	45
CciI	TCATGA	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	174
CviJI	RGCY	1 cut(s)	32
CviKI_1	RGCY	1 cut(s)	32
CviQI	GTAC	1 cut(s)	126
FaeI	CATG	1 cut(s)	177
FaiI	YATR	6 cut(s)	96, 112, 114, 116, 162, 175
FatI	CATG	1 cut(s)	173
FspEI	CC	9 cut(s)	3, 33, 39, 67, 103, 108, 135, 146, 150
Hin1II	CATG	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	17, 94, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	177
LpnPI	CCDG	2 cut(s)	3, 33
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	177
PagI	TCATGA	1 cut(s)	173
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	6 cut(s)	22, 34, 127, 135, 154, 169
SgeI	CNNG	5 cut(s)	30, 52, 56, 60, 146
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	91
TasI	AATT	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.