Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

50792075 .. 50792242

Gene Structure 168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGTTCTTAATAAGATGCGTGAAATAGTAGAGGCCTACATCGGATTGACGGTAAAGAATGTCGTTATAACTGTCCCAGCATACTTTAATGACTTACAACGTCAGACCACTAAGGAAGCCGGTGTAATTGCAGGAATGAATGTTAATGAATGTTATTCGTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009941 GO:0009987 GO:0010029 GO:0010035 GO:0010038 GO:0010118 GO:0010187 GO:0012505 GO:0016020 GO:0016363 GO:0019899 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0034399 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0080167 GO:0090332 GO:0098542 GO:0098588 GO:0098805 GO:1900140 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

55

Amino Acids

6.26

Weight (kDa)

6.07

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 48	2.3e-19	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AoxI	GGCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	6
Bse118I	RCCGGY	1 cut(s)	119
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	52, 73
BstDEI	CTNAG	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	119
CviJI	RGCY	2 cut(s)	35, 119
CviKI_1	RGCY	2 cut(s)	35, 119
DdeI	CTNAG	1 cut(s)	111
Eco147I	AGGCCT	1 cut(s)	35
FaiI	YATR	2 cut(s)	68, 82
FaqI	GGGAC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	1 cut(s)	120
HpaII	CCGG	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	44, 105
HpyCH4III	ACNGT	2 cut(s)	52, 73
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	90, 117, 133
LweI	GCATC	1 cut(s)	6
MaeII	ACGT	1 cut(s)	100
MluCI	AATT	1 cut(s)	126
MnlI	CCTC	1 cut(s)	25
MseI	TTAA	4 cut(s)	9, 87, 144, 166
MspI	CCGG	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	35
PsiI	TTATAA	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	76
SaqAI	TTAA	4 cut(s)	9, 87, 144, 166
SetI	ASST	1 cut(s)	103
SfaNI	GCATC	1 cut(s)	6
SgeI	CNNG	4 cut(s)	32, 89, 132, 144
Sse9I	AATT	1 cut(s)	126
SseBI	AGGCCT	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	52, 73
TaiI	ACGT	1 cut(s)	103
TasI	AATT	1 cut(s)	126
Tru1I	TTAA	4 cut(s)	9, 87, 144, 166
Tru9I	TTAA	4 cut(s)	9, 87, 144, 166
TspDTI	ATGAA	2 cut(s)	152, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.