RchiOBHm_Chr1g0366661
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
57132679 .. 57133872
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59119

Sequence Viewer

Length: 549 bp
ATGAGCGGTAGTGAAGAAAAGGGTCATGCAATAGGGATTGATCTAGGTACATGCCACTCGTGCGTGGCAGTGTGGGAAGACGATCGTGTGGAAATCACAGTGAACGATCAAGGCAACAGGACCACCCCATCTTGTGTTGCCTTCACTCAAACCCACCGCTTTGTTGGCGATGCGGCGACCAAACAGGTCAACTCATCAGAAACCCTACCTACTCCATCTTCGGTAGGGTTCATCATTCTCCATTTATATATCAATATTTTATGTTCCAATTACTATATTTGCAAAATTGCATCTGAAATTAGCTTTCTAAGGATTCTTTTATATGGTTTGGGTAAACATTGCCAACTGGGATCAACTGTAAATGATGCCGTTAGCACCGTCCCTGGTTACTTTAAAGACGCACAACGTCAGGCTACAAAATCTGCTGGGGTCACTGCTGGTATGAATGTGATGCATATTGTCAACGAACCAACTGCAGCAGCCATTGCTTATGGCCTTAGCAAGAAGGCCGGTCGGTATAGCGAGAGACAGACGTGTGCTAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

182

Amino Acids

19.58

Weight (kDa)

6.98

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 10 - 65 3e-19 Hsp70 protein
HSP70 PF00012 115 - 170 1e-23 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 3 cut(s) 6, 157, 173
AclWI GGATC 1 cut(s) 358
AfaI GTAC 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 533
AjiI CACGTC 1 cut(s) 534
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 520
AlwI GGATC 1 cut(s) 358
AoxI GGCC 2 cut(s) 493, 507
ApeKI GCWGC 2 cut(s) 476, 479
AspS9I GGNCC 1 cut(s) 120
AvaII GGWCC 1 cut(s) 120
BauI CACGAG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 488, 491
BccI CCATC 2 cut(s) 136, 223
BceAI ACGGC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 474
BisI GCNGC 3 cut(s) 174, 477, 480
BlsI GCNGC 3 cut(s) 175, 478, 481
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 4 cut(s) 160, 299, 355, 441
BmuI ACTGGG 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 2 cut(s) 337, 483
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 382
BseMI GCAATG 2 cut(s) 337, 483
BseNI ACTGG 1 cut(s) 351
BseXI GCAGC 2 cut(s) 488, 491
BseYI CCCAGC 1 cut(s) 425
Bsh1285I CGRYCG 2 cut(s) 85, 514
BshFI GGCC 2 cut(s) 495, 509
BsiEI CGRYCG 2 cut(s) 85, 514
BsiSI CCGG 1 cut(s) 510
BslFI GGGAC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 520
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 2 cut(s) 495, 509
Bsp143I GATC 4 cut(s) 40, 82, 106, 350
BspACI CCGC 3 cut(s) 6, 157, 173
BspANI GGCC 2 cut(s) 495, 509
BspMAI CTGCAG 1 cut(s) 478
BspPI GGATC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 2 cut(s) 337, 483
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 4 cut(s) 40, 82, 106, 350
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 100, 358, 379
BstAPI GCANNNNNTGC 1 cut(s) 485
BstDEI CTNAG 2 cut(s) 308, 497
BstKTI GATC 4 cut(s) 43, 85, 109, 353
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 4 cut(s) 40, 82, 106, 350
BstMCI CGRYCG 2 cut(s) 85, 514
BstMWI GCNNNNNNNGC 3 cut(s) 60, 165, 485
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 2 cut(s) 488, 491
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 2 cut(s) 495, 509
BtgZI GCGATG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 534
BtsI GCAGTG 2 cut(s) 75, 432
BtsIMutI CAGTG 3 cut(s) 75, 105, 432
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 26, 51
CviJI RGCY 5 cut(s) 303, 413, 482, 495, 509
CviKI_1 RGCY 5 cut(s) 303, 413, 482, 495, 509
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 2 cut(s) 308, 497
DpnI GATC 4 cut(s) 42, 84, 108, 352
DpnII GATC 4 cut(s) 40, 82, 106, 350
DraI TTTAAA 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 456
FaeI CATG 2 cut(s) 29, 54
FaqI GGGAC 1 cut(s) 365
FatI CATG 2 cut(s) 25, 50
Fnu4HI GCNGC 3 cut(s) 174, 477, 480
Fsp4HI GCNGC 3 cut(s) 174, 477, 480
FspBI CTAG 1 cut(s) 44
GluI GCNGC 3 cut(s) 174, 477, 480
GsaI CCCAGC 1 cut(s) 429
HaeIII GGCC 2 cut(s) 495, 509
HapII CCGG 1 cut(s) 510
HgaI GACGC 1 cut(s) 407
Hin1II CATG 2 cut(s) 29, 54
HincII GTYRAC 2 cut(s) 190, 463
HindII GTYRAC 2 cut(s) 190, 463
HinfI GANTC 1 cut(s) 313
HpaII CCGG 1 cut(s) 510
Hpy166II GTNNAC 4 cut(s) 103, 190, 335, 463
Hpy188I TCNGA 2 cut(s) 199, 295
Hpy8I GTNNAC 4 cut(s) 103, 190, 335, 463
HpyAV CCTTC 2 cut(s) 151, 499
HpyCH4III ACNGT 3 cut(s) 100, 358, 379
HpyCH4IV ACGT 2 cut(s) 406, 533
HpyCH4V TGCA 5 cut(s) 29, 282, 290, 454, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 165, 485
HpyF3I CTNAG 2 cut(s) 308, 497
HpySE526I ACGT 2 cut(s) 406, 533
Hsp92II CATG 2 cut(s) 29, 54
Kzo9I GATC 4 cut(s) 40, 82, 106, 350
LpnPI CCDG 9 cut(s) 103, 170, 332, 369, 395, 396, 411, 423, 523
Lsp1109I GCAGC 2 cut(s) 488, 491
LweI GCATC 4 cut(s) 160, 299, 355, 441
MaeI CTAG 1 cut(s) 44
MaeII ACGT 2 cut(s) 406, 533
MaeIII GTNAC 2 cut(s) 386, 430
MalI GATC 4 cut(s) 42, 84, 108, 352
MbiI CCGCTC 1 cut(s) 6
MboI GATC 4 cut(s) 40, 82, 106, 350
MboII GAAGA 3 cut(s) 26, 89, 210
MluCI AATT 3 cut(s) 268, 285, 297
Mph1103I ATGCAT 1 cut(s) 456
MseI TTAA 1 cut(s) 393
MspI CCGG 1 cut(s) 510
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 3 cut(s) 60, 165, 485
NdeII GATC 4 cut(s) 40, 82, 106, 350
NlaIII CATG 2 cut(s) 29, 54
NmuCI GTSAC 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 456
NspI RCATGY 1 cut(s) 54
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 3 cut(s) 175, 478, 481
Ple19I CGATCG 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 382
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 382
PspPI GGNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 478
PvuI CGATCG 1 cut(s) 85
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 3 cut(s) 174, 477, 480
Sau3AI GATC 4 cut(s) 40, 82, 106, 350
Sau96I GGNCC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 384
SetI ASST 6 cut(s) 49, 189, 211, 305, 409, 536
SfaNI GCATC 4 cut(s) 160, 299, 355, 441
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 120
Sse9I AATT 3 cut(s) 268, 285, 297
SsiI CCGC 3 cut(s) 6, 157, 173
SspI AATATT 2 cut(s) 256, 544
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 3 cut(s) 100, 358, 379
TaiI ACGT 2 cut(s) 409, 536
TasI AATT 3 cut(s) 268, 285, 297
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 3 cut(s) 75, 105, 439
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 2 cut(s) 476, 479
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 220, 458
TspRI CASTG 3 cut(s) 75, 105, 439
VpaK11BI GGWCC 1 cut(s) 120
XceI RCATGY 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.