RchiOBHm_Chr1g0367301

protein serine/threonine kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
57609609 .. 57612699
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59177

Sequence Viewer

Length: 1233 bp
ATGCTAATAGAAAAATTGTCATCAATTACAGTGCCTTCATCTCCTCGGACACAGAACGAGATCTTGCCAAGAAGATTCTTCTATAATGAACTGAAAACAGCAACCTGGAACTTTCATCCTGTTAATATGGTGGGTAAAGGTTGTTATGGTCGTGTTTTTAAGGGGTGGATTGATGATAATACATCAGCATCTGCCAAACCCGGTACTGGCATGTTAATTGCTGTGAAGACAATTAAAGGAGAAGGTTTACAGGGTCAAAAGGAATGGTTGATTGCCCTCGGTGCTGCCAAGGCTCTAGCATTTATTCATAATAGTGAGGGAAAAGTGATCCATCGGGACTTCAAAAGTTCTAATATCCTACTGGATTCAAACTACAATGCCAAACTCGCTGATTTTGGTTTTGCTAAGGACGGACCAGCAGGTGATAGTAGCCATGTCTCGACAAGGGTGATGGGGACATATGGATATGCAGCTCCAGAGTATGTTGCTTCAGGTCATTTAACCAGCAAAAATGATGTGTATGGTTTTGGAGTTGTTATGCTCGAATTGTTGACAGGAAAACCAGTTCTTGACACCAGCCGGGCAACCAGGGAACAAGATCTAGTTGAATGGGCCAAACCATACCTCGCCAGCAAACCATACCTCGCCAGCAAACGCAGAGTTCTTAAAATTTTGGATGCTCGTATTAAAGGCCAGTATTCTGTGGCTGCAGCTCGTAAAGCGGCTAACCTTGCAAATCAATGCTTATCAGCAGAACCCGAGTTGAGGCCAAACATGAATGAGGTGGTAAAAGAATTAGAGCAGCTTCAGGAATCAGGTGACATTGAGGGCGCAGGAATCTCTCATAGCGAGCCTTGCCAATCTCCTTATTCCAATTCAAGCAGTGTCAAATCAAGCTGGAGAAGTTGGATCAGCTTCAGTGAGGGAAAAGTGATCCATCGGGACGTCAAAAGCTCTAATATCTTGCTTGATTCAACCTACAATGCCAAACTCTCTGATTTTGGTTTGGCAAAGGATGGACCAGCTGGTGTTAAAAGCCATGTCTTAACAAGGGTGGTGGGGCACATGGGACATTTAACCTGCAAGAGTGATGTATATGGTTTTGGAGTTGTTATGCTTGAAATGTTGTCCGGAAGACGAGTTCTGGATAATAGCAGACCACCCAGGGAACACAATTTAGTCGAATGGGCCAAACCTTACCTTACCTCTCAAAATTTTTGGTGCTCGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

410

Amino Acids

45.15

Weight (kDa)

9.18

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 86 - 266 2.6e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 92 - 264 4.1e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 308 - 380 1.4e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 310 - 387 1.2e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 410
AatII GACGTC 1 cut(s) 948
Acc36I ACCTGC 2 cut(s) 410, 1088
AccIII TCCGGA 1 cut(s) 1130
AciI CCGC 1 cut(s) 722
AclWI GGATC 3 cut(s) 322, 917, 928
AcsI RAATTY 2 cut(s) 669, 1213
AcuI CTGAAG 3 cut(s) 474, 791, 901
AcyI GRCGYC 1 cut(s) 945
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 206, 765
AgsI TTSAA 6 cut(s) 343, 369, 608, 879, 975, 1121
AjnI CCWGG 3 cut(s) 104, 587, 1163
AloI GAACNNNNNNTCC 4 cut(s) 549, 581, 1125, 1157
AluBI AGCT 7 cut(s) 473, 713, 805, 897, 915, 954, 1025
AluI AGCT 7 cut(s) 473, 713, 805, 897, 915, 954, 1025
Alw21I GWGCWC 1 cut(s) 1226
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 3 cut(s) 322, 917, 928
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 758
Aor13HI TCCGGA 1 cut(s) 1130
AoxI GGCC 4 cut(s) 612, 691, 767, 1188
ApeKI GCWGC 5 cut(s) 284, 470, 707, 710, 802
ApoI RAATTY 2 cut(s) 669, 1213
AspLEI GCGC 1 cut(s) 833
AspS9I GGNCC 4 cut(s) 413, 612, 1019, 1188
AsuC2I CCSGG 2 cut(s) 201, 581
AsuHPI GGTGA 3 cut(s) 434, 460, 830
AvaI CYCGRG 1 cut(s) 758
AvaII GGWCC 2 cut(s) 413, 1019
BaeGI GKGCMC 1 cut(s) 1065
BbsI GAAGAC 2 cut(s) 233, 1141
Bbv12I GWGCWC 1 cut(s) 1226
BbvI GCAGC 5 cut(s) 271, 482, 694, 722, 814
BccI CCATC 4 cut(s) 339, 445, 945, 1010
BciT130I CCWGG 3 cut(s) 106, 589, 1165
BcnI CCSGG 2 cut(s) 201, 581
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 2 cut(s) 296, 602
BfmI CTRYAG 1 cut(s) 708
BfuAI ACCTGC 2 cut(s) 410, 1088
BglII AGATCT 2 cut(s) 60, 598
BisI GCNGC 6 cut(s) 285, 471, 708, 711, 723, 803
BlsI GCNGC 6 cut(s) 286, 472, 709, 712, 724, 804
Bme1390I CCNGG 5 cut(s) 106, 201, 581, 589, 1165
Bme18I GGWCC 2 cut(s) 413, 1019
BmeT110I CYCGRG 1 cut(s) 758
BmgT120I GGNCC 4 cut(s) 413, 612, 1019, 1188
BmrFI CCNGG 5 cut(s) 106, 201, 581, 589, 1165
BmsI GCATC 2 cut(s) 197, 667
BpiI GAAGAC 2 cut(s) 233, 1141
BpmI CTGGAG 2 cut(s) 459, 919
Bpu10I CCTNAGC 1 cut(s) 405
BpuMI CCSGG 2 cut(s) 201, 581
BsaHI GRCGYC 1 cut(s) 945
BsaJI CCNNGG 6 cut(s) 44, 277, 288, 588, 1163, 1164
BsaWI WCCGGW 1 cut(s) 1130
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 765
Bse1I ACTGG 4 cut(s) 211, 366, 563, 694
BseAI TCCGGA 1 cut(s) 1130
BseBI CCWGG 3 cut(s) 106, 589, 1165
BseDI CCNNGG 6 cut(s) 44, 277, 288, 588, 1163, 1164
BseGI GGATG 3 cut(s) 115, 682, 1021
BseLI CCNNNNNNNGG 2 cut(s) 206, 765
BseNI ACTGG 4 cut(s) 211, 366, 563, 694
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 1065
BseXI GCAGC 5 cut(s) 271, 482, 694, 722, 814
BshFI GGCC 4 cut(s) 614, 693, 769, 1190
BsiHKAI GWGCWC 1 cut(s) 1226
BsiHKCI CYCGRG 1 cut(s) 758
BsiSI CCGG 3 cut(s) 201, 580, 1131
BslFI GGGAC 4 cut(s) 350, 469, 956, 1083
BslI CCNNNNNNNGG 2 cut(s) 206, 765
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 4 cut(s) 350, 469, 956, 1083
BsnI GGCC 4 cut(s) 614, 693, 769, 1190
BsoBI CYCGRG 1 cut(s) 758
Bsp1286I GDGCHC 2 cut(s) 1065, 1226
Bsp13I TCCGGA 1 cut(s) 1130
Bsp143I GATC 5 cut(s) 60, 327, 598, 909, 933
BspACI CCGC 1 cut(s) 722
BspANI GGCC 4 cut(s) 614, 693, 769, 1190
BspEI TCCGGA 1 cut(s) 1130
BspMAI CTGCAG 1 cut(s) 712
BspMI ACCTGC 2 cut(s) 410, 1088
BspPI GGATC 3 cut(s) 322, 917, 928
BsrI ACTGG 4 cut(s) 211, 366, 563, 694
BssECI CCNNGG 6 cut(s) 44, 277, 288, 588, 1163, 1164
BssMI GATC 5 cut(s) 60, 327, 598, 909, 933
BssNI GRCGYC 1 cut(s) 945
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 106, 589, 1165
Bst4CI ACNGT 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 945
BstC8I GCNNGC 3 cut(s) 631, 649, 851
BstDEI CTNAG 1 cut(s) 405
BstF5I GGATG 3 cut(s) 115, 682, 1021
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 5 cut(s) 63, 330, 601, 912, 936
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 5 cut(s) 60, 327, 598, 909, 933
BstMWI GCNNNNNNNGC 6 cut(s) 281, 290, 386, 719, 731, 855
BstNI CCWGG 3 cut(s) 106, 589, 1165
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 5 cut(s) 104, 199, 579, 587, 1163
BstSFI CTRYAG 1 cut(s) 708
BstSLI GKGCMC 1 cut(s) 1065
BstV1I GCAGC 5 cut(s) 271, 482, 694, 722, 814
BstV2I GAAGAC 2 cut(s) 233, 1141
BstX2I RGATCY 2 cut(s) 60, 598
BstYI RGATCY 2 cut(s) 60, 598
BsuRI GGCC 4 cut(s) 614, 693, 769, 1190
BtsCI GGATG 3 cut(s) 115, 682, 1021
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 3 cut(s) 36, 889, 925
BveI ACCTGC 2 cut(s) 410, 1088
Cac8I GCNNGC 3 cut(s) 631, 649, 851
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 833
Cfr13I GGNCC 4 cut(s) 413, 612, 1019, 1188
Csp6I GTAC 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 1038, 1073
CviAII CATG 5 cut(s) 211, 434, 775, 1040, 1066
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 405
DpnI GATC 5 cut(s) 62, 329, 600, 911, 935
DpnII GATC 5 cut(s) 60, 327, 598, 909, 933
Eco130I CCWWGG 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 413, 1019
Eco57I CTGAAG 3 cut(s) 474, 791, 901
Eco88I CYCGRG 1 cut(s) 758
EcoRII CCWGG 3 cut(s) 104, 587, 1163
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 5 cut(s) 214, 437, 778, 1043, 1069
FaqI GGGAC 4 cut(s) 350, 469, 956, 1083
FatI CATG 5 cut(s) 210, 433, 774, 1039, 1065
FauNDI CATATG 1 cut(s) 460
Fnu4HI GCNGC 6 cut(s) 285, 471, 708, 711, 723, 803
FokI GGATG 3 cut(s) 102, 689, 1028
Fsp4HI GCNGC 6 cut(s) 285, 471, 708, 711, 723, 803
FspBI CTAG 2 cut(s) 296, 602
GlaI GCGC 1 cut(s) 832
GluI GCNGC 6 cut(s) 285, 471, 708, 711, 723, 803
GsuI CTGGAG 2 cut(s) 459, 919
HaeIII GGCC 4 cut(s) 614, 693, 769, 1190
HapII CCGG 3 cut(s) 201, 580, 1131
HhaI GCGC 1 cut(s) 833
Hin1I GRCGYC 1 cut(s) 945
Hin1II CATG 5 cut(s) 214, 437, 778, 1043, 1069
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 5 cut(s) 75, 365, 812, 837, 971
HpaII CCGG 3 cut(s) 201, 580, 1131
HphI GGTGA 3 cut(s) 434, 460, 830
Hpy166II GTNNAC 2 cut(s) 248, 552
Hpy188I TCNGA 2 cut(s) 48, 997
Hpy188III TCNNGA 8 cut(s) 335, 439, 476, 569, 809, 941, 1131, 1145
Hpy8I GTNNAC 2 cut(s) 248, 552
HpyAV CCTTC 2 cut(s) 45, 236
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 945
HpyCH4V TGCA 4 cut(s) 470, 710, 734, 1083
HpyF10VI GCNNNNNNNGC 6 cut(s) 281, 290, 386, 719, 731, 855
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 1 cut(s) 945
Hsp92I GRCGYC 1 cut(s) 945
Hsp92II CATG 5 cut(s) 214, 437, 778, 1043, 1069
HspAI GCGC 1 cut(s) 831
Kpn2I TCCGGA 1 cut(s) 1130
Kzo9I GATC 5 cut(s) 60, 327, 598, 909, 933
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 5 cut(s) 271, 482, 694, 722, 814
LweI GCATC 2 cut(s) 197, 667
MaeI CTAG 2 cut(s) 296, 602
MaeII ACGT 1 cut(s) 945
MaeIII GTNAC 1 cut(s) 818
MalI GATC 5 cut(s) 62, 329, 600, 911, 935
MboI GATC 5 cut(s) 60, 327, 598, 909, 933
MboII GAAGA 4 cut(s) 70, 84, 238, 1146
MflI RGATCY 2 cut(s) 60, 598
MhlI GDGCHC 2 cut(s) 1065, 1226
MmeI TCCRAC 1 cut(s) 887
MroI TCCGGA 1 cut(s) 1130
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 1025
MspI CCGG 3 cut(s) 201, 580, 1131
MspR9I CCNGG 5 cut(s) 106, 201, 581, 589, 1165
MvaI CCWGG 3 cut(s) 106, 589, 1165
MwoI GCNNNNNNNGC 6 cut(s) 281, 290, 386, 719, 731, 855
NciI CCSGG 2 cut(s) 201, 581
NdeI CATATG 1 cut(s) 460
NdeII GATC 5 cut(s) 60, 327, 598, 909, 933
NlaIII CATG 5 cut(s) 214, 437, 778, 1043, 1069
NmuCI GTSAC 1 cut(s) 818
NspI RCATGY 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 410
PasI CCCWGGG 1 cut(s) 1164
PfeI GAWTC 5 cut(s) 75, 365, 812, 837, 971
PkrI GCNGC 6 cut(s) 286, 472, 709, 712, 724, 804
Psp6I CCWGG 3 cut(s) 104, 587, 1163
PspGI CCWGG 3 cut(s) 104, 587, 1163
PspPI GGNCC 4 cut(s) 413, 612, 1019, 1188
PstI CTGCAG 1 cut(s) 712
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 2 cut(s) 60, 598
PvuII CAGCTG 1 cut(s) 1025
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 312
SatI GCNGC 6 cut(s) 285, 471, 708, 711, 723, 803
Sau3AI GATC 5 cut(s) 60, 327, 598, 909, 933
Sau96I GGNCC 4 cut(s) 413, 612, 1019, 1188
ScrFI CCNGG 5 cut(s) 106, 201, 581, 589, 1165
SduI GDGCHC 2 cut(s) 1065, 1226
SfaNI GCATC 2 cut(s) 197, 667
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 2 cut(s) 413, 1019
SmiMI CAYNNNNRTG 1 cut(s) 312
SsiI CCGC 1 cut(s) 722
SspMI CTAG 2 cut(s) 296, 602
StyD4I CCNGG 5 cut(s) 104, 199, 579, 587, 1163
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 948
TaqI TCGA 3 cut(s) 440, 543, 1182
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 5 cut(s) 75, 365, 812, 837, 971
TscAI CASTG 3 cut(s) 36, 889, 925
TseFI GTSAC 1 cut(s) 818
TseI GCWGC 5 cut(s) 284, 470, 707, 710, 802
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 5 cut(s) 27, 102, 104, 296, 791
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 3 cut(s) 36, 889, 925
VpaK11BI GGWCC 2 cut(s) 413, 1019
XapI RAATTY 2 cut(s) 669, 1213
XceI RCATGY 1 cut(s) 214
XspI CTAG 2 cut(s) 296, 602
ZraI GACGTC 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.