RchiOBHm_Chr1g0367681
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
57995689 .. 57996195
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59210

Sequence Viewer

Length: 300 bp
ATGACCACCGGCTTCTGGTTTATGAATTTATGCCTCGTAGAAGGTTGGAGATTCATCTATATGGAAGGGATTCTTATTTCTTACCTTCAGCCACTTTCGTGGACCCTGCGGATGAAGATTGCCCTTGGTGCTGCTAAGGTTCTAGCATTTCTTCACGGTACTGAGGGAAACGTGATCCATCGGGACGTTAAAACCTCTAATATCCTGCTGGATTCAACCTATAATGCCAAACTCTCTGATTTTGGGTTGGCAAAGGATGGACCAGCTGGTGATAAAAGCCATGTTAGTGATAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.08

Weight (kDa)

7.91

Isoelectric Point (pI)

28.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 29 - 94 1.1e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 37 - 90 2.9e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 109
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 216
AleI CACNNNNGTG 1 cut(s) 97
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 102, 260
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 2 cut(s) 102, 260
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 186, 251
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 2 cut(s) 102, 260
BmgT120I GGNCC 2 cut(s) 102, 260
BmiI GGNNCC 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 2 cut(s) 117, 262
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 158
BstDEI CTNAG 2 cut(s) 135, 162
BstF5I GGATG 2 cut(s) 117, 262
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 117, 262
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 102, 260
Csp6I GTAC 1 cut(s) 159
CviAII CATG 1 cut(s) 281
CviJI RGCY 4 cut(s) 12, 91, 266, 279
CviKI_1 RGCY 4 cut(s) 12, 91, 266, 279
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 2 cut(s) 135, 162
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 102, 260
Eco57I CTGAAG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 1 cut(s) 284
FaiI YATR 6 cut(s) 23, 31, 60, 62, 222, 282
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 2 cut(s) 124, 269
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 132
HapII CCGG 1 cut(s) 9
Hin1II CATG 1 cut(s) 284
HinfI GANTC 3 cut(s) 51, 70, 212
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 3 cut(s) 35, 59, 95
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 2 cut(s) 171, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 135, 162
HpySE526I ACGT 2 cut(s) 171, 186
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 6 cut(s) 22, 119, 194, 218, 252, 276
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 143
MaeII ACGT 2 cut(s) 171, 186
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 127, 143
MluCI AATT 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 3 cut(s) 44, 157, 205
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 3 cut(s) 59, 97, 285
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 3 cut(s) 51, 70, 212
PkrI GCNGC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 2 cut(s) 102, 260
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 3 cut(s) 59, 97, 285
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 102, 260
SetI ASST 8 cut(s) 46, 87, 141, 174, 189, 197, 221, 268
SinI GGWCC 2 cut(s) 102, 260
SmiMI CAYNNNNRTG 3 cut(s) 59, 97, 285
Sse9I AATT 1 cut(s) 25
SsiI CCGC 1 cut(s) 109
SspMI CTAG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 2 cut(s) 174, 189
TasI AATT 1 cut(s) 25
TfiI GAWTC 3 cut(s) 51, 70, 212
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 38, 43, 128
VpaK11BI GGWCC 2 cut(s) 102, 260
XapI RAATTY 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.