RchiOBHm_Chr1g0371821

protein serine/threonine kinase activity

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
N/A
Physical Location & Seq
Forward (+)
60806665 .. 60806895
231 bp
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UTR
Exon/CDS
Intron
PRQ59587

Sequence Viewer

Length: 180 bp
ATGCAGGGTTTGATGATCGTGACAACGGTGAGAAACAACAGCTTGCTAGACCAACCCTCTTTGAACGCTTTTGATATCATATCTCTTTCAAGTGGATTAGATTTGTCTGGTTTGTTCAAGATATGCCTGGTTCGACTTGTCAGCGTGTGTTCTTCGAAACTCCCAGCTACACTTTCATGA

Protein Analysis

59

Amino Acids

6.28

Weight (kDa)

7.81

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAF PF03822 20 - 51 1.9e-11 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 64, 90, 118
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 42, 167
AluI AGCT 2 cut(s) 42, 167
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 128
BfaI CTAG 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 155
BseBI CCWGG 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 163
Bsp119I TTCGAA 1 cut(s) 155
Bsp143I GATC 1 cut(s) 15
BspHI TCATGA 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 155
BssMI GATC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 44
CciI TCATGA 1 cut(s) 176
CviAII CATG 1 cut(s) 177
CviJI RGCY 2 cut(s) 42, 167
CviKI_1 RGCY 2 cut(s) 42, 167
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 126
EcoRV GATATC 1 cut(s) 76
FaeI CATG 1 cut(s) 180
FaiI YATR 3 cut(s) 80, 124, 178
FatI CATG 1 cut(s) 176
FspBI CTAG 1 cut(s) 47
FspEI CC 9 cut(s) 11, 65, 69, 70, 78, 93, 113, 140, 176
GsaI CCCAGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 180
HphI GGTGA 1 cut(s) 40
Hpy188III TCNNGA 3 cut(s) 19, 118, 177
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 1 cut(s) 180
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 3 cut(s) 93, 113, 140
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 1 cut(s) 144
MnlI CCTC 1 cut(s) 67
MslI CAYNNNNRTG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 155
PagI TCATGA 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 163
PspGI CCWGG 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 175
Sau3AI GATC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 128
SetI ASST 2 cut(s) 44, 169
SfuI TTCGAA 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 175
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 133, 155
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 165
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.