Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3510501 .. 3510993

Gene Structure 493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAGTCTCTCTCCGAGCTCATCACCAAACACCACTGGGGCACCCATTTCGTTAACTCCACGCCGCCCGGCCTAGCACAATGCCACCGAGATCCCCGTCTGCCCTCCCCTCCCTGTCCGCCCGCATTTTTCTCGACGGCTGCTTCCTCCGCTACCACAACTACAGCTTCTAATCCGAAGCTTCCGTCCTGGCCGTCGACGCAGTCGTCTGCGGGGGAGATGGCGCAGCGGTGTTTAAGGAGAATGTTGCGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

85

Amino Acids

9.32

Weight (kDa)

10.11

Isoelectric Point (pI)

67.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	197
AciI	CCGC	6 cut(s)	65, 119, 123, 150, 212, 229
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	3 cut(s)	19, 167, 181
AluI	AGCT	3 cut(s)	19, 167, 181
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	70, 191
ApeKI	GCWGC	2 cut(s)	140, 226
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	127, 238
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	2 cut(s)	153, 178
BcgI	CGANNNNNNTGC	4 cut(s)	31, 65, 114, 148
BciT130I	CCWGG	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	3 cut(s)	65, 141, 227
BlsI	GCNGC	3 cut(s)	66, 142, 228
Bme1390I	CCNGG	2 cut(s)	69, 190
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	69, 190
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	127, 238
BshFI	GGCC	2 cut(s)	72, 193
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	72, 193
Bsp1286I	GDGCHC	2 cut(s)	21, 44
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	6 cut(s)	65, 119, 123, 150, 212, 229
BspANI	GGCC	2 cut(s)	72, 193
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 199
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	67, 188
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	127, 238
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	72, 193
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	226
CseI	GACGC	1 cut(s)	208
CviJI	RGCY	6 cut(s)	19, 72, 140, 167, 181, 193
CviKI_1	RGCY	6 cut(s)	19, 72, 140, 167, 181, 193
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	188
EcoT38I	GRGCYC	1 cut(s)	21
FauI	CCCGC	2 cut(s)	130, 205
FblI	GTMKAC	1 cut(s)	197
Fnu4HI	GCNGC	3 cut(s)	65, 141, 227
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	65, 141, 227
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	3 cut(s)	65, 141, 227
HaeIII	GGCC	2 cut(s)	72, 193
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	2 cut(s)	55, 198
HindII	GTYRAC	2 cut(s)	55, 198
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	5
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	55, 198
Hpy188I	TCNGA	2 cut(s)	16, 177
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	55, 198
Hpy99I	CGWCG	3 cut(s)	139, 199, 202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 199
HspAI	GCGC	1 cut(s)	224
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	5 cut(s)	22, 82, 127, 175, 202
Lsp1109I	GCAGC	2 cut(s)	127, 238
MaeI	CTAG	1 cut(s)	74
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	21, 44
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	115, 120, 157
MseI	TTAA	2 cut(s)	54, 236
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	69, 190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	149, 199
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	66, 142, 228
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	202
SacI	GAGCTC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	54, 236
SatI	GCNGC	3 cut(s)	65, 141, 227
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	69, 190
SduI	GDGCHC	2 cut(s)	21, 44
SetI	ASST	4 cut(s)	21, 169, 183, 257
SfcI	CTRYAG	1 cut(s)	162
SgrDI	CGTCGACG	1 cut(s)	196
SsiI	CCGC	6 cut(s)	65, 119, 123, 150, 212, 229
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	67, 188
TaqI	TCGA	2 cut(s)	134, 197
TauI	GCSGC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	54, 236
Tru9I	TTAA	2 cut(s)	54, 236
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	2 cut(s)	140, 226
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	41
Tth111I	GACNNNGTC	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	197
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.