RchiOBHm_Chr2g0106561

positive regulation of cell-substrate adhesion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
17930798 .. 17932779
1982 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48064

Sequence Viewer

Length: 1437 bp
ATGAAATTTCTTGAAATCTGTATTCTTTCAGGATGTTCAAAGCTTAAAGAGTTTCCGGAGATTAATGGAGATATGGATAAATTGTCACAACTGCATTTAGATGGGACGGCTTTAGAGAATCTGCTGATACCAATGCAGCATTTGAAATGCCCTATTGTGATAAATCTAAGAGGTTGCAAGAACCTATTGACTATTCCAATCCTTTTGAGTCTGAAAGCTCTCAATCTGTCAGGCTGCTCTCGTATATCCAGATTTCCAAATAACTGGGGAAGCATGGCACATTTGGAGGAGCTTGATGCCTCTGAAACTGCTATAACACGAGTACCCCAGTCCATTTCATTTATGGAGAAGCTTAAAGTGTTGTCTTTCTGTGGATGTAAAGGTTTGCAGTTGCCTAACCGGTTCTCGCAATTAAGCTTTTTGACATCATTAAATCTACGGGGGTGTGGTCTAGCAGAACTAACAGTCCTTGCTAGCCTCTGTGGCTTATCCTCACTGCAAAAGTTGGATTTGAGTGGAAACAAATTTGTGAGTATACCTAGTGAAATTAGTCGCTTATCCTCTTTGAAGCGATTGAATTTGAGTAGGAACGACTTGGTGAGTATACCAGATGCAATTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAATTGGTCGGCTTTCCTCTTTGCAGCAATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAATTGGTCGGCTTTCCTCTTTGCAGCGATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAACTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTATGAATGACTTGGTGAGTATACCAGATGCAACTGGTGGCTTATCCTCTTTGCAGCTATTGGATTTGAGTATGAATGACTTGGTGAGTATACCAGATGCAACTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTATGAATGACTTGGTGAGTATACCAGATGCAACTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTATGAACGACTTGGTGAGTATACCAGATGCAATTGGTCGACTCTCCTCTTTGCAGCGATTGGATTTGAGTACGAACGACTTGGTGAGTATACCAGATGCAATTGGTCGACTTTCCTCTTTGCAGCGATTGGATTTGAGTATGAACGACTTGGTGAGTATACCAGATGCAATTGGTGGCTTATCCTCTTTGCAGCGATTGGATTTGAGTGCGAACGACTTGGTGAGTATACCCGATGCAATTGATCGACTCTCCTCGTTGGAGCGATTGGATTTGAGTAGGAACAAGCTGGTGAGCATACCAGATGCAATCGGTCTCTTAACATCCTTGAAGCATTTAGATTGGAGTGAAAACAACTCTGTCAGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04064 ko04115 ko04210 map04064 map04115 map04210
Pfam Domains
Protein Families
Death LRR_8 Peptidase_S68 ZU5

Protein Analysis

478

Amino Acids

51.35

Weight (kDa)

4.78

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 45 - 145 3e-08 Leucine-rich repeat region
LRR_14 PF23598 136 - 242 8.1e-14 Leucine-rich repeat region
LRR_8 PF13855 165 - 222 2.5e-12 Leucine rich repeat
LRR_8 PF13855 188 - 245 5.1e-11 Leucine rich repeat
LRR_8 PF13855 222 - 268 2.6e-07 Leucine rich repeat
LRR_8 PF13855 234 - 291 5.4e-10 Leucine rich repeat
LRR_14 PF23598 237 - 332 4.9e-09 Leucine-rich repeat region
LRR_8 PF13855 257 - 314 6.3e-10 Leucine rich repeat
LRR_14 PF23598 277 - 356 4.3e-07 Leucine-rich repeat region
LRR_8 PF13855 280 - 337 9.2e-10 Leucine rich repeat
LRR_14 PF23598 301 - 401 1.9e-10 Leucine-rich repeat region
LRR_8 PF13855 326 - 383 2.1e-10 Leucine rich repeat
LRR_14 PF23598 347 - 425 1.6e-10 Leucine-rich repeat region
LRR_8 PF13855 372 - 429 1.5e-11 Leucine rich repeat
LRR_14 PF23598 389 - 471 7.5e-11 Leucine-rich repeat region
LRR_8 PF13855 434 - 474 5.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 55
AcsI RAATTY 3 cut(s) 5, 524, 577
AfaI GTAC 6 cut(s) 324, 655, 724, 793, 1138, 1432
AgeI ACCGGT 1 cut(s) 399
AgsI TTSAA 6 cut(s) 14, 39, 145, 568, 577, 1396
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 7 cut(s) 43, 218, 292, 352, 417, 916, 1354
AluI AGCT 7 cut(s) 43, 218, 292, 352, 417, 916, 1354
Alw26I GTCTC 1 cut(s) 1385
AlwNI CAGNNNCTG 1 cut(s) 1434
Aor13HI TCCGGA 1 cut(s) 55
ApoI RAATTY 3 cut(s) 5, 524, 577
AseI ATTAAT 1 cut(s) 63
AsiGI ACCGGT 1 cut(s) 399
AsuNHI GCTAGC 1 cut(s) 473
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BauI CACGAG 1 cut(s) 318
BccI CCATC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 1385
BfaI CTAG 3 cut(s) 452, 474, 540
BglI GCCNNNNNGGC 1 cut(s) 483
BmrI ACTGGG 2 cut(s) 274, 322
BmtI GCTAGC 1 cut(s) 477
BmuI ACTGGG 2 cut(s) 274, 322
BsaI GGTCTC 1 cut(s) 1385
BsaWI WCCGGW 2 cut(s) 55, 399
Bse118I RCCGGY 1 cut(s) 399
Bse1I ACTGG 6 cut(s) 269, 328, 829, 898, 967, 1036
BseAI TCCGGA 1 cut(s) 55
BseGI GGATG 3 cut(s) 38, 380, 1388
BseNI ACTGG 6 cut(s) 269, 328, 829, 898, 967, 1036
BseRI GAGGAG 3 cut(s) 302, 1102, 1309
BshTI ACCGGT 1 cut(s) 399
BsiSI CCGG 2 cut(s) 56, 400
BslFI GGGAC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 1385
BsmFI GGGAC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 1385
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 1 cut(s) 1309
BspEI TCCGGA 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 1385
BsrFI RCCGGY 1 cut(s) 399
BsrI ACTGG 6 cut(s) 269, 328, 829, 898, 967, 1036
BssAI RCCGGY 1 cut(s) 399
BssMI GATC 1 cut(s) 1309
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 38, 380, 1388
BstKTI GATC 1 cut(s) 1312
BstMAI GTCTC 1 cut(s) 1385
BstMBI GATC 1 cut(s) 1309
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstXI CCANNNNNNTGG 1 cut(s) 264
BtsCI GGATG 3 cut(s) 38, 380, 1388
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 494
Cac8I GCNNGC 1 cut(s) 475
CaiI CAGNNNCTG 1 cut(s) 1434
Cfr10I RCCGGY 1 cut(s) 399
Csp6I GTAC 6 cut(s) 323, 654, 723, 792, 1137, 1431
CspAI ACCGGT 1 cut(s) 399
CviAII CATG 1 cut(s) 274
CviQI GTAC 6 cut(s) 323, 654, 723, 792, 1137, 1431
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 1311
DpnII GATC 1 cut(s) 1309
Eco31I GGTCTC 1 cut(s) 1385
FaeI CATG 1 cut(s) 277
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 273
FokI GGATG 3 cut(s) 45, 387, 1375
FspBI CTAG 3 cut(s) 452, 474, 540
HapII CCGG 2 cut(s) 56, 400
Hin1II CATG 1 cut(s) 277
HincII GTYRAC 2 cut(s) 1106, 1175
HindII GTYRAC 2 cut(s) 1106, 1175
HindIII AAGCTT 3 cut(s) 41, 350, 415
HinfI GANTC 4 cut(s) 118, 208, 1107, 1314
HpaII CCGG 2 cut(s) 56, 400
Hpy188I TCNGA 2 cut(s) 213, 304
Hpy188III TCNNGA 4 cut(s) 11, 30, 56, 249
HpyCH4III ACNGT 1 cut(s) 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 277
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 1309
LmnI GCTCC 2 cut(s) 289, 1327
MaeI CTAG 3 cut(s) 452, 474, 540
MaeIII GTNAC 1 cut(s) 84
MalI GATC 1 cut(s) 1311
MboI GATC 1 cut(s) 1309
MfeI CAATTG 8 cut(s) 615, 684, 710, 753, 1098, 1167, 1236, 1305
MlyI GAGTC 3 cut(s) 217, 1101, 1308
MmeI TCCRAC 2 cut(s) 486, 1305
MroI TCCGGA 1 cut(s) 55
MseI TTAA 6 cut(s) 45, 63, 354, 413, 431, 1385
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 2 cut(s) 56, 400
MunI CAATTG 8 cut(s) 615, 684, 710, 753, 1098, 1167, 1236, 1305
MwoI GCNNNNNNNGC 1 cut(s) 483
NdeII GATC 1 cut(s) 1309
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 118
PinAI ACCGGT 1 cut(s) 399
PleI GAGTC 3 cut(s) 216, 1101, 1308
PpsI GAGTC 3 cut(s) 216, 1101, 1308
PshBI ATTAAT 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 1434
RsaI GTAC 6 cut(s) 324, 655, 724, 793, 1138, 1432
RsaNI GTAC 6 cut(s) 323, 654, 723, 792, 1137, 1431
RseI CAYNNNNRTG 1 cut(s) 99
SalI GTCGAC 2 cut(s) 1104, 1173
SaqAI TTAA 6 cut(s) 45, 63, 354, 413, 431, 1385
Sau3AI GATC 1 cut(s) 1309
SchI GAGTC 3 cut(s) 217, 1101, 1308
SmiMI CAYNNNNRTG 1 cut(s) 99
SspMI CTAG 3 cut(s) 452, 474, 540
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 3 cut(s) 1105, 1174, 1312
TaqII GACCGA 1 cut(s) 1367
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 6 cut(s) 45, 63, 354, 413, 431, 1385
Tru9I TTAA 6 cut(s) 45, 63, 354, 413, 431, 1385
TscAI CASTG 1 cut(s) 501
TseFI GTSAC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 7 cut(s) 17, 327, 878, 947, 1016, 1085, 1223
TspRI CASTG 1 cut(s) 501
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 3 cut(s) 5, 524, 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XspI CTAG 3 cut(s) 452, 474, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.