RchiOBHm_Chr2g0111641

Lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
23277871 .. 23278131
261 bp
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UTR
Exon/CDS
Intron
PRQ48522

Sequence Viewer

Length: 261 bp
ATGTCACCAGAATACATATATTCCAGTCGTGCAAGCAAAGAGCTAGACAAATGTTTTCAGCTTTGGGATGGTTTCATTAGAAATTGCTACTGGAAAGAAGGCAATCTGCTAGAGTGGCTTCTCTCAGCTGTTGATGAAAGATTGTATATGGCTTTTGACCAAAAACAGGCAGAGTGTTTGATGATTGTTGGCTTGTGGTGTGCTCATCTGTATAGCAGCCTCAGGCCCTCCATATTCCTATTTCTGTTGAGAGGAATATAA

Protein Analysis

86

Amino Acids

10.22

Weight (kDa)

5.71

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 43, 61, 128
AluI AGCT 3 cut(s) 43, 61, 128
Alw21I GWGCWC 1 cut(s) 205
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 225
AxyI CCTNAGG 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 228
BccI CCATC 1 cut(s) 62
BfaI CTAG 2 cut(s) 44, 110
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 24, 95
Bse21I CCTNAGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 138, 235
BseNI ACTGG 2 cut(s) 24, 95
BseXI GCAGC 1 cut(s) 228
BshFI GGCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 205
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 2 cut(s) 137, 234
BsrI ACTGG 2 cut(s) 24, 95
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 124, 221
BstF5I GGATG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 228
Bsu36I CCTNAGG 1 cut(s) 221
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 225
CviJI RGCY 8 cut(s) 43, 61, 118, 128, 152, 192, 219, 226
CviKI_1 RGCY 8 cut(s) 43, 61, 118, 128, 152, 192, 219, 226
DdeI CTNAG 2 cut(s) 124, 221
Eco81I CCTNAGG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 225
FaiI YATR 7 cut(s) 17, 19, 147, 149, 213, 233, 259
Fnu4HI GCNGC 1 cut(s) 217
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 217
FspBI CTAG 2 cut(s) 44, 110
GluI GCNGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 124, 221
LpnPI CCDG 5 cut(s) 21, 37, 76, 152, 208
Lsp1109I GCAGC 1 cut(s) 228
MaeI CTAG 2 cut(s) 44, 110
MaeIII GTNAC 1 cut(s) 3
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 82
MnlI CCTC 3 cut(s) 230, 238, 245
MspA1I CMGCKG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 3
PkrI GCNGC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 128
SatI GCNGC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 225
SduI GDGCHC 1 cut(s) 205
SetI ASST 3 cut(s) 45, 63, 130
Sse9I AATT 1 cut(s) 82
SspMI CTAG 2 cut(s) 44, 110
TasI AATT 1 cut(s) 82
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 64, 150
XspI CTAG 2 cut(s) 44, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.