RchiOBHm_Chr2g0113331

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
25504941 .. 25508554
3614 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48668

Sequence Viewer

Length: 129 bp
ATGTGTAGAACCACTGAATACATGGCTCCTGAAATTCTGCTGTCTAAAGGCCACAACAAAGATGCAGATTGGTGGAGCATTGGTATACTTTTGTATGAGATGCTAAGTGGTCAGTTTAATTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

42

Amino Acids

4.86

Weight (kDa)

4.9

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 38 6.5e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 37 7.3e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 85
AcsI RAATTY 1 cut(s) 33
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 2 cut(s) 52, 90
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
BshFI GGCC 1 cut(s) 51
BsnI GGCC 1 cut(s) 51
BspANI GGCC 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 27
BssNAI GTATAC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 12
CviAII CATG 1 cut(s) 22
CviJI RGCY 2 cut(s) 26, 51
CviKI_1 RGCY 2 cut(s) 26, 51
DdeI CTNAG 1 cut(s) 104
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 86, 96
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 85
FspEI CC 9 cut(s) 8, 25, 33, 42, 55, 58, 65, 66, 93
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 2 cut(s) 31, 75
LpnPI CCDG 1 cut(s) 42
LweI GCATC 2 cut(s) 52, 90
MluCI AATT 2 cut(s) 33, 118
MseI TTAA 1 cut(s) 117
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 117
SfaNI GCATC 2 cut(s) 52, 90
SgeI CNNG 2 cut(s) 34, 41
Sse9I AATT 2 cut(s) 33, 118
TasI AATT 2 cut(s) 33, 118
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 19
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.