RchiOBHm_Chr2g0121531

divergent subfamily of APPLE domains

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
34449078 .. 34449692
615 bp
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UTR
Exon/CDS
Intron
PRQ49404

Sequence Viewer

Length: 234 bp
ATGAAGATCCTGTTGCACAGCTTTTGGAGACTGGAAATTTGTTGTCAGAGATACATTGTTAGCGGGGATGGAGATTGGATGGGATTTCAGAACCGGCCTCAACAACTTCTTGATTTCTTGAAAAATGCTAGCGATCCATTTCTTGGTGAGTATACCTATAGGATTGTTAATCTTGCTTTACCTCAGCTTGTTCTTGCTGAGGGATCGGAGAAAGAGTTTCGAAGTGGGCCCTGA

Protein Analysis

77

Amino Acids

8.95

Weight (kDa)

5.68

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AccI GTMKAC 1 cut(s) 152
AciI CCGC 1 cut(s) 63
AclWI GGATC 2 cut(s) 128, 211
AcsI RAATTY 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 2 cut(s) 21, 187
AluI AGCT 2 cut(s) 21, 187
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 2 cut(s) 128, 211
AoxI GGCC 2 cut(s) 95, 227
ApaI GGGCCC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AspS9I GGNCC 2 cut(s) 227, 228
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 231
BbvCI CCTCAGC 2 cut(s) 183, 198
BccI CCATC 2 cut(s) 62, 73
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 227, 228
BmiI GGNNCC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 132
Bpu10I CCTNAGC 2 cut(s) 183, 198
Bpu14I TTCGAA 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 73, 84
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 189, 197
BseNI ACTGG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 231
BshFI GGCC 2 cut(s) 97, 229
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 97, 229
Bsp119I TTCGAA 1 cut(s) 220
Bsp120I GGGCCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 6, 133, 203
BspACI CCGC 1 cut(s) 63
BspANI GGCC 2 cut(s) 97, 229
BspCNI CTCAG 2 cut(s) 190, 196
BspLI GGNNCC 1 cut(s) 229
BspOI GCTAGC 1 cut(s) 132
BspPI GGATC 2 cut(s) 128, 211
BspT104I TTCGAA 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 93
BssMI GATC 3 cut(s) 6, 133, 203
BssNAI GTATAC 1 cut(s) 153
Bst1107I GTATAC 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 183, 198
BstF5I GGATG 2 cut(s) 73, 84
BstKTI GATC 3 cut(s) 9, 136, 206
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 3 cut(s) 6, 133, 203
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BstZ17I GTATAC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 97, 229
BtsCI GGATG 2 cut(s) 73, 84
Cac8I GCNNGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 227, 228
CviJI RGCY 4 cut(s) 21, 97, 187, 229
CviKI_1 RGCY 4 cut(s) 21, 97, 187, 229
DdeI CTNAG 2 cut(s) 183, 198
DpnI GATC 3 cut(s) 8, 135, 205
DpnII GATC 3 cut(s) 6, 133, 203
Eco24I GRGCYC 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 231
FaiI YATR 2 cut(s) 153, 159
FauI CCCGC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 152
FokI GGATG 2 cut(s) 80, 91
FriOI GRGCYC 1 cut(s) 231
FspBI CTAG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 97, 229
HapII CCGG 1 cut(s) 94
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 3 cut(s) 48, 90, 208
Hpy188III TCNNGA 2 cut(s) 110, 118
Hpy8I GTNNAC 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 183, 198
Kzo9I GATC 3 cut(s) 6, 133, 203
LpnPI CCDG 3 cut(s) 17, 23, 107
MaeI CTAG 1 cut(s) 129
MalI GATC 3 cut(s) 8, 135, 205
MboI GATC 3 cut(s) 6, 133, 203
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 36
MnlI CCTC 3 cut(s) 108, 192, 193
MseI TTAA 1 cut(s) 168
MspI CCGG 1 cut(s) 94
NdeII GATC 3 cut(s) 6, 133, 203
NheI GCTAGC 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 229
NspV TTCGAA 1 cut(s) 220
PflMI CCANNNNNTGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 229
PspOMI GGGCCC 1 cut(s) 227
PspPI GGNCC 2 cut(s) 227, 228
PsuI RGATCY 1 cut(s) 6
SaqAI TTAA 1 cut(s) 168
Sau3AI GATC 3 cut(s) 6, 133, 203
Sau96I GGNCC 2 cut(s) 227, 228
SduI GDGCHC 1 cut(s) 231
SetI ASST 4 cut(s) 23, 158, 184, 189
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 220
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 63
SspMI CTAG 1 cut(s) 129
TaqI TCGA 1 cut(s) 220
TasI AATT 1 cut(s) 36
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 152
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.