RchiOBHm_Chr2g0123261

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
36392596 .. 36393423
828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49557

Sequence Viewer

Length: 258 bp
ATGATTGTTAGCATGTGGTGCGCTCATCTGGATAGCAGCCTCAGGCCCTCCATAAGGCAAGCAGTTAAGGTTCTAAATTTTCATGCAGCAAAACCGGATCTTCCAATGGAGATGCCTCCCGGAAAACCAGACCAAGGTGTTGAAATTTCAGGAGCTAGACTCCTCAAATTTCAATGTAGAGGTGGTGATGATAAAAAGGTTTGGTACCTGTTTCGATCTGTTGATTACAGAACTGTATTTTATGCCAATTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

85

Amino Acids

9.74

Weight (kDa)

9.18

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 204
AclWI GGATC 1 cut(s) 105
AcsI RAATTY 3 cut(s) 76, 144, 167
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 54, 134
AgsI TTSAA 2 cut(s) 143, 173
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AlwI GGATC 1 cut(s) 105
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 36, 86
ApoI RAATTY 3 cut(s) 76, 144, 167
Asp718I GGTACC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 48, 98
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 37, 87
BlsI GCNGC 2 cut(s) 38, 88
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 134
Bse21I CCTNAGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 54, 134
BseMII CTCAG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 48, 98
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 204
BsiSI CCGG 2 cut(s) 95, 120
BslI CCNNNNNNNGG 2 cut(s) 54, 134
BsnI GGCC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 97, 215
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 97, 215
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 52
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 2 cut(s) 100, 218
BstMBI GATC 2 cut(s) 97, 215
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 48, 98
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 41
BsuRI GGCC 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 13, 83
CviJI RGCY 3 cut(s) 39, 46, 155
CviKI_1 RGCY 3 cut(s) 39, 46, 155
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 99, 217
DpnII GATC 2 cut(s) 97, 215
Eco130I CCWWGG 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 2 cut(s) 16, 86
FaiI YATR 4 cut(s) 14, 53, 84, 243
FatI CATG 2 cut(s) 12, 82
Fnu4HI GCNGC 2 cut(s) 37, 87
Fsp4HI GCNGC 2 cut(s) 37, 87
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 37, 87
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 95, 120
HhaI GCGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 16, 86
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 95, 120
HphI GGTGA 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 29, 150
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 2 cut(s) 16, 86
HspAI GCGC 1 cut(s) 21
KpnI GGTACC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 97, 215
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 14, 28, 108, 133, 135, 141, 221
Lsp1109I GCAGC 2 cut(s) 48, 98
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 156
MalI GATC 2 cut(s) 99, 217
MboI GATC 2 cut(s) 97, 215
MboII GAAGA 1 cut(s) 92
MflI RGATCY 1 cut(s) 97
MluCI AATT 4 cut(s) 76, 144, 167, 247
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 5 cut(s) 50, 58, 126, 173, 173
MseI TTAA 1 cut(s) 66
MspI CCGG 2 cut(s) 95, 120
MspR9I CCNGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 120
NdeII GATC 2 cut(s) 97, 215
NlaIII CATG 2 cut(s) 16, 86
NlaIV GGNNCC 1 cut(s) 206
NspI RCATGY 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 2 cut(s) 38, 88
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 45
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 37, 87
Sau3AI GATC 2 cut(s) 97, 215
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 120
SetI ASST 6 cut(s) 72, 139, 157, 184, 201, 210
SfaNI GCATC 1 cut(s) 102
Sse9I AATT 4 cut(s) 76, 144, 167, 247
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 214
TasI AATT 4 cut(s) 76, 144, 167, 247
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 2 cut(s) 36, 86
TspDTI ATGAA 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 52
XapI RAATTY 3 cut(s) 76, 144, 167
XceI RCATGY 1 cut(s) 16
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.