Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56107966 .. 56110015

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50909

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGTTCCATGCAGTCTACATACTTGGCTCCTGAATATGCATCCAGTGGAAAGCTCAGTGATAAGTCAGATGTCTTCTCATTCGGGGCCGTGCTATTGGAATTGATTACTGGACGCCAACCCATTGATAAAACTCATTCCTTCACTGATGATAGCATGGTTGAGTGGGCAAGGCCTTTGCTCGCGCGAGCATTGGAAAGGGGAAACTTTGATGGTCTTGTTGATGAAAGGTTGCAGAATGATTACAACTCCAGCGAAATGGCTTGTATGATTGCCTGCGCTGCTGCTTCTGTGAGTCATTCTGCTCGCCGTCGGCCAAAAATGAGCCAGGTAGTTAGAGCTTTGGAAGGCAATCTTTCTCCAGATGAATTAAATGAAGGAGTTATACCAGGTCAGAGTATGATATACAGTTCCTCTGAAAGCACACAATACAGTACCCGTGAATACAAGGAAGACATGTTGAAATTTAGAAAGTTAGCACTAGAAAGCCAAGAGCTAGAACAAGGAATTAGTGAGACCAGTGGGCCCAGCAGTGATTTTGGCCAGCACCAATCTGCCTCCAGTGGTGAAGGCCAACAAACCACTCAAGATATCGAACACGGGCAAATGAACAAAGACAGCCAAGACTATGGTAAAAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

214

Amino Acids

23.61

Weight (kDa)

4.76

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 47	1.5e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	6 - 47	3.3e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	2 cut(s)	185, 187
AcoI	YGGCCR	2 cut(s)	314, 541
AcsI	RAATTY	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	1 cut(s)	436
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	327, 388
AluBI	AGCT	4 cut(s)	55, 341, 496, 639
AluI	AGCT	4 cut(s)	55, 341, 496, 639
Alw26I	GTCTC	1 cut(s)	509
AoxI	GGCC	6 cut(s)	87, 173, 314, 524, 541, 571
ApaI	GGGCCC	1 cut(s)	528
ApeKI	GCWGC	2 cut(s)	281, 284
ApoI	RAATTY	1 cut(s)	464
AspLEI	GCGC	2 cut(s)	187, 281
AspS9I	GGNCC	3 cut(s)	87, 524, 525
AsuHPI	GGTGA	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	528
BalI	TGGCCA	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BbsI	GAAGAC	2 cut(s)	67, 459
BbvI	GCAGC	2 cut(s)	268, 271
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	2 cut(s)	74, 294
BciT130I	CCWGG	2 cut(s)	329, 390
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	2 cut(s)	482, 497
BisI	GCNGC	2 cut(s)	282, 285
BlsI	GCNGC	2 cut(s)	283, 286
Bme1390I	CCNGG	2 cut(s)	329, 390
BmgT120I	GGNCC	3 cut(s)	87, 524, 525
BmiI	GGNNCC	4 cut(s)	7, 30, 88, 526
BmrFI	CCNGG	2 cut(s)	329, 390
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	2 cut(s)	67, 459
BpmI	CTGGAG	3 cut(s)	235, 345, 544
BpuEI	CTTGAG	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	509
Bse1I	ACTGG	4 cut(s)	45, 115, 519, 561
BseBI	CCWGG	2 cut(s)	329, 390
BseGI	GGATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	4 cut(s)	45, 115, 519, 561
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	2 cut(s)	268, 271
BseYI	CCCAGC	1 cut(s)	527
Bsh1236I	CGCG	2 cut(s)	185, 187
BshFI	GGCC	6 cut(s)	89, 175, 316, 526, 543, 573
BsmAI	GTCTC	1 cut(s)	509
BsnI	GGCC	6 cut(s)	89, 175, 316, 526, 543, 573
Bso31I	GGTCTC	1 cut(s)	509
Bsp120I	GGGCCC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	528
BspANI	GGCC	6 cut(s)	89, 175, 316, 526, 543, 573
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	2 cut(s)	185, 187
BspLI	GGNNCC	4 cut(s)	7, 30, 88, 526
BspTNI	GGTCTC	1 cut(s)	509
BsrI	ACTGG	4 cut(s)	45, 115, 519, 561
BssNI	GRCGYC	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	329, 390
Bst4CI	ACNGT	2 cut(s)	410, 434
BstACI	GRCGYC	1 cut(s)	115
BstC8I	GCNNGC	5 cut(s)	183, 189, 277, 307, 545
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	2 cut(s)	185, 187
BstHHI	GCGC	2 cut(s)	187, 281
BstMAI	GTCTC	1 cut(s)	509
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	2 cut(s)	329, 390
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	2 cut(s)	327, 388
BstSLI	GKGCMC	1 cut(s)	528
BstUI	CGCG	2 cut(s)	185, 187
BstV1I	GCAGC	2 cut(s)	268, 271
BstV2I	GAAGAC	2 cut(s)	67, 459
BstXI	CCANNNNNNTGG	2 cut(s)	259, 629
BsuRI	GGCC	6 cut(s)	89, 175, 316, 526, 543, 573
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	6 cut(s)	52, 64, 144, 526, 538, 568
Cac8I	GCNNGC	5 cut(s)	183, 189, 277, 307, 545
CfoI	GCGC	2 cut(s)	187, 281
Cfr13I	GGNCC	3 cut(s)	87, 524, 525
CseI	GACGC	1 cut(s)	123
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	3 cut(s)	10, 157, 457
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	1 cut(s)	56
EaeI	YGGCCR	2 cut(s)	314, 541
Eco147I	AGGCCT	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	528
Eco31I	GGTCTC	1 cut(s)	509
Eco32I	GATATC	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	327, 388
EcoRV	GATATC	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	528
FaeI	CATG	3 cut(s)	13, 160, 460
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FatI	CATG	3 cut(s)	9, 156, 456
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	282, 285
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	2 cut(s)	282, 285
FspBI	CTAG	2 cut(s)	482, 497
GlaI	GCGC	2 cut(s)	186, 280
GluI	GCNGC	2 cut(s)	282, 285
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	3 cut(s)	235, 345, 544
HaeIII	GGCC	6 cut(s)	89, 175, 316, 526, 543, 573
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	2 cut(s)	187, 281
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	13, 160, 460
Hin6I	GCGC	2 cut(s)	185, 279
HinP1I	GCGC	2 cut(s)	185, 279
HinfI	GANTC	1 cut(s)	295
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	3 cut(s)	70, 396, 418
Hpy188III	TCNNGA	3 cut(s)	32, 362, 587
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	4 cut(s)	151, 341, 371, 563
HpyCH4III	ACNGT	2 cut(s)	410, 434
HpyCH4V	TGCA	3 cut(s)	13, 41, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	13, 160, 460
HspAI	GCGC	2 cut(s)	185, 279
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	2 cut(s)	268, 271
LweI	GCATC	1 cut(s)	50
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	2 cut(s)	482, 497
MboII	GAAGA	2 cut(s)	67, 464
MhlI	GDGCHC	1 cut(s)	528
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	4 cut(s)	101, 368, 464, 507
MluNI	TGGCCA	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	2 cut(s)	424, 568
Mox20I	TGGCCA	1 cut(s)	543
Mph1103I	ATGCAT	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	543
MspR9I	CCNGG	2 cut(s)	329, 390
MvaI	CCWGG	2 cut(s)	329, 390
MvnI	CGCG	2 cut(s)	185, 187
MwoI	GCNNNNNNNGC	1 cut(s)	281
NlaIII	CATG	3 cut(s)	13, 160, 460
NlaIV	GGNNCC	4 cut(s)	7, 30, 88, 526
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	175
PciI	ACATGT	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	283, 286
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PscI	ACATGT	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	327, 388
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	2 cut(s)	327, 388
PspN4I	GGNNCC	4 cut(s)	7, 30, 88, 526
PspOMI	GGGCCC	1 cut(s)	524
PspPI	GGNCC	3 cut(s)	87, 524, 525
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	2 cut(s)	282, 285
Sau96I	GGNCC	3 cut(s)	87, 524, 525
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	329, 390
SduI	GDGCHC	1 cut(s)	528
SetI	ASST	7 cut(s)	57, 233, 333, 343, 394, 498, 641
SexAI	ACCWGGT	1 cut(s)	388
SfaNI	GCATC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	585
SmoI	CTYRAG	1 cut(s)	585
Sse9I	AATT	4 cut(s)	101, 368, 464, 507
SseBI	AGGCCT	1 cut(s)	175
SspMI	CTAG	2 cut(s)	482, 497
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	327, 388
TaaI	ACNGT	2 cut(s)	410, 434
TaqI	TCGA	1 cut(s)	594
TasI	AATT	4 cut(s)	101, 368, 464, 507
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	6 cut(s)	52, 64, 151, 526, 538, 568
TseI	GCWGC	2 cut(s)	281, 284
TspDTI	ATGAA	4 cut(s)	240, 381, 390, 623
TspRI	CASTG	6 cut(s)	52, 64, 151, 526, 538, 568
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	2 cut(s)	482, 497
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.