RchiOBHm_Chr2g0144491

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
62084188 .. 62085967
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51443

Sequence Viewer

Length: 834 bp
ATGGCATTTCTCAGATCATCTTCAGTTGCTCAGGACACCGGCCCAACCTTGGTGGCCATCGACAAAGATAAACACAGCCACTTTGCAGTCAAATGGGCAGTTGATAATCTGATCAAGACCTCCAAGTGCATCCTCATTCATGTTAGAAACAAAAGCTTGCATCCTCGTAGGTATCCGTCACTTCGGTATCACCACCACCGTACTAGGCATAGGGACACATTATATATACCGGATGCTGCTGCAATCCCCAAAGAAGGTCGCCCTCCAACTGAAGCCGAGTTGCAACAGTTCTTTCTTCCCTATCGAGGATTCTGTGCACGAAAAGGGATTATAGCCATGGAAGTGGTCCTCCACGACATTGATGTTCCAAGCGCACTTGTTCATTATATTATTCACAACGCCATCTCCAATATTGTCGTTGGTGCTTCCCATCGCAATGCTCTTACGAGAAAATTTAAAGACTTTGATGTGCCAAGTAGCCTACTCAAATATGTACCAGATACCTGTGCAGTATATGTTATATCATCAAAAGGAAGACTTCAGGCTAAACGGGCAGCAAGTCAACCTCAAACACCGAAATGTGATGCAGAGCCTCTCCGGGATACTTCTCAAGAAAACCATCTTCCTTCCCATCCTCATGATGGTTCAGACTCTGAAGACATCCCTAGGTATAATATCCACAACTTCATTACCTTTGATGAGTCAAGTTTATGTCGCTTGGTTTTGAATTTTTCCTGCACTGCAGATCACAATTTAGTCATGGGAGCTCAAGTTCAAAAAGTGCCTCCTCAGACAGAATATCTTTTGATAGACTCTCTGACTTTAAACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

277

Amino Acids

31.3

Weight (kDa)

8.98

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 452, 727
AcuI CTGAAG 4 cut(s) 6, 291, 524, 675
AfaI GTAC 2 cut(s) 202, 495
AfiI CCNNNNNNNGG 4 cut(s) 49, 254, 305, 641
AgsI TTSAA 2 cut(s) 727, 776
AloI GAACNNNNNNTCC 2 cut(s) 756, 788
AluBI AGCT 2 cut(s) 156, 767
AluI AGCT 2 cut(s) 156, 767
Alw21I GWGCWC 2 cut(s) 319, 769
Alw44I GTGCAC 1 cut(s) 315
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 2 cut(s) 40, 54
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 3 cut(s) 236, 239, 554
ApoI RAATTY 2 cut(s) 452, 727
AspA2I CCTAGG 1 cut(s) 665
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 41, 346
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 346
AvrII CCTAGG 1 cut(s) 665
BaeGI GKGCMC 1 cut(s) 319
BaeI ACNNNNGTAYC 2 cut(s) 170, 203
BalI TGGCCA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 769
BbsI GAAGAC 2 cut(s) 541, 663
Bbv12I GWGCWC 2 cut(s) 319, 769
BbvI GCAGC 3 cut(s) 223, 226, 566
BccI CCATC 6 cut(s) 65, 410, 438, 627, 635, 639
BciVI GTATCC 2 cut(s) 183, 595
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 1 cut(s) 599
BfaI CTAG 2 cut(s) 204, 666
BfmI CTRYAG 1 cut(s) 741
BfuI GTATCC 2 cut(s) 183, 595
BisI GCNGC 3 cut(s) 237, 240, 555
BlnI CCTAGG 1 cut(s) 665
BlsI GCNGC 3 cut(s) 238, 241, 556
Bme1390I CCNGG 1 cut(s) 599
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 41, 346
BmrFI CCNGG 1 cut(s) 599
BmsI GCATC 4 cut(s) 138, 169, 223, 574
BpiI GAAGAC 2 cut(s) 541, 663
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 594, 753
BpuMI CCSGG 1 cut(s) 599
BsaJI CCNNGG 3 cut(s) 48, 336, 665
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 4 cut(s) 389, 419, 756, 786
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 254, 305, 641
Bse118I RCCGGY 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 48, 336, 665
BseGI GGATG 5 cut(s) 129, 160, 238, 631, 660
BseLI CCNNNNNNNGG 4 cut(s) 49, 254, 305, 641
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 3 cut(s) 25, 44, 803
BseRI GAGGAG 1 cut(s) 777
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 3 cut(s) 223, 226, 566
BsgI GTGCAG 2 cut(s) 528, 721
BshFI GGCC 2 cut(s) 42, 56
BsiHKAI GWGCWC 2 cut(s) 319, 769
BsiSI CCGG 3 cut(s) 39, 230, 598
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 4 cut(s) 49, 254, 305, 641
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 42, 56
Bsp1286I GDGCHC 2 cut(s) 319, 769
Bsp143I GATC 3 cut(s) 14, 111, 745
Bsp19I CCATGG 1 cut(s) 336
BspANI GGCC 2 cut(s) 42, 56
BspCNI CTCAG 3 cut(s) 24, 43, 802
BspHI TCATGA 1 cut(s) 637
BspMAI CTGCAG 1 cut(s) 745
BsrDI GCAATG 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 3 cut(s) 48, 336, 665
BssMI GATC 3 cut(s) 14, 111, 745
BssT1I CCWWGG 3 cut(s) 48, 336, 665
Bst4CI ACNGT 2 cut(s) 200, 288
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 11, 30, 789
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 5 cut(s) 129, 160, 238, 631, 660
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 3 cut(s) 17, 114, 748
BstMBI GATC 3 cut(s) 14, 111, 745
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 3 cut(s) 223, 226, 566
BstV2I GAAGAC 2 cut(s) 541, 663
BstXI CCANNNNNNTGG 1 cut(s) 343
BsuI GTATCC 2 cut(s) 183, 595
BsuRI GGCC 2 cut(s) 42, 56
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 5 cut(s) 129, 160, 238, 631, 660
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 1 cut(s) 738
Cac8I GCNNGC 1 cut(s) 158
CaiI CAGNNNCTG 1 cut(s) 653
CciI TCATGA 1 cut(s) 637
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 41, 346
Csp6I GTAC 2 cut(s) 201, 494
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviAII CATG 4 cut(s) 140, 337, 638, 760
CviQI GTAC 2 cut(s) 201, 494
DdeI CTNAG 3 cut(s) 11, 30, 789
DpnI GATC 3 cut(s) 16, 113, 747
DpnII GATC 3 cut(s) 14, 111, 745
DraI TTTAAA 2 cut(s) 457, 825
EaeI YGGCCR 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 767
Eco130I CCWWGG 3 cut(s) 48, 336, 665
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 346
Eco53kI GAGCTC 1 cut(s) 767
Eco57I CTGAAG 4 cut(s) 6, 291, 524, 675
EcoICRI GAGCTC 1 cut(s) 767
EcoT14I CCWWGG 3 cut(s) 48, 336, 665
EcoT38I GRGCYC 1 cut(s) 769
ErhI CCWWGG 3 cut(s) 48, 336, 665
FaeI CATG 4 cut(s) 143, 340, 641, 763
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 139, 336, 637, 759
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 237, 240, 555
FokI GGATG 5 cut(s) 116, 147, 245, 618, 647
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 3 cut(s) 237, 240, 555
FspBI CTAG 2 cut(s) 204, 666
GlaI GCGC 1 cut(s) 373
GluI GCNGC 3 cut(s) 237, 240, 555
HaeIII GGCC 2 cut(s) 42, 56
HapII CCGG 3 cut(s) 39, 230, 598
HhaI GCGC 1 cut(s) 374
Hin1II CATG 4 cut(s) 143, 340, 641, 763
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HincII GTYRAC 1 cut(s) 563
HindII GTYRAC 1 cut(s) 563
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 4 cut(s) 309, 650, 701, 812
HpaII CCGG 3 cut(s) 39, 230, 598
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 317, 563
Hpy188I TCNGA 6 cut(s) 14, 111, 649, 655, 792, 819
Hpy188III TCNNGA 4 cut(s) 32, 115, 611, 638
Hpy8I GTNNAC 2 cut(s) 317, 563
HpyAV CCTTC 2 cut(s) 248, 636
HpyCH4III ACNGT 2 cut(s) 200, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 3 cut(s) 11, 30, 789
Hsp92II CATG 4 cut(s) 143, 340, 641, 763
HspAI GCGC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 3 cut(s) 14, 111, 745
LmnI GCTCC 1 cut(s) 764
LpnPI CCDG 8 cut(s) 17, 52, 243, 510, 517, 527, 611, 748
Lsp1109I GCAGC 3 cut(s) 223, 226, 566
LweI GCATC 4 cut(s) 138, 169, 223, 574
MaeI CTAG 2 cut(s) 204, 666
MaeIII GTNAC 1 cut(s) 177
MalI GATC 3 cut(s) 16, 113, 747
MboI GATC 3 cut(s) 14, 111, 745
MboII GAAGA 5 cut(s) 12, 287, 546, 614, 668
MhlI GDGCHC 2 cut(s) 319, 769
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 3 cut(s) 452, 727, 751
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 3 cut(s) 644, 710, 806
MmeI TCCRAC 1 cut(s) 290
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 2 cut(s) 456, 824
MslI CAYNNNNRTG 4 cut(s) 341, 435, 577, 636
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 3 cut(s) 39, 230, 598
MspR9I CCNGG 1 cut(s) 599
MwoI GCNNNNNNNGC 1 cut(s) 551
NciI CCSGG 1 cut(s) 599
NcoI CCATGG 1 cut(s) 336
NdeII GATC 3 cut(s) 14, 111, 745
NlaIII CATG 4 cut(s) 143, 340, 641, 763
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 177
PagI TCATGA 1 cut(s) 637
PfeI GAWTC 1 cut(s) 309
PfoI TCCNGGA 1 cut(s) 597
PkrI GCNGC 3 cut(s) 238, 241, 556
PleI GAGTC 3 cut(s) 644, 709, 806
PpsI GAGTC 3 cut(s) 644, 709, 806
Psp124BI GAGCTC 1 cut(s) 769
PspPI GGNCC 2 cut(s) 41, 346
PstI CTGCAG 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 653
RsaI GTAC 2 cut(s) 202, 495
RsaNI GTAC 2 cut(s) 201, 494
RseI CAYNNNNRTG 4 cut(s) 341, 435, 577, 636
SacI GAGCTC 1 cut(s) 769
SaqAI TTAA 2 cut(s) 456, 824
SatI GCNGC 3 cut(s) 237, 240, 555
Sau3AI GATC 3 cut(s) 14, 111, 745
Sau96I GGNCC 2 cut(s) 41, 346
SchI GAGTC 3 cut(s) 644, 710, 806
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 2 cut(s) 319, 769
SfaNI GCATC 4 cut(s) 138, 169, 223, 574
SfcI CTRYAG 1 cut(s) 741
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 4 cut(s) 341, 435, 577, 636
SmlI CTYRAG 2 cut(s) 609, 768
SmoI CTYRAG 2 cut(s) 609, 768
Sse9I AATT 3 cut(s) 452, 727, 751
SspI AATATT 1 cut(s) 412
SspMI CTAG 2 cut(s) 204, 666
SstI GAGCTC 1 cut(s) 769
StyD4I CCNGG 1 cut(s) 597
StyI CCWWGG 3 cut(s) 48, 336, 665
TaaI ACNGT 2 cut(s) 200, 288
TaqI TCGA 2 cut(s) 60, 304
TasI AATT 3 cut(s) 452, 727, 751
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 2 cut(s) 456, 824
Tru9I TTAA 2 cut(s) 456, 824
TscAI CASTG 1 cut(s) 745
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 3 cut(s) 236, 239, 554
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 3 cut(s) 128, 371, 676
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 745
VneI GTGCAC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 2 cut(s) 452, 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmaJI CCTAGG 1 cut(s) 665
XspI CTAG 2 cut(s) 204, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.