RchiOBHm_Chr2g0147941

Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
65537820 .. 65540540
2721 bp
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UTR
Exon/CDS
Intron
PRQ51752

Sequence Viewer

Length: 225 bp
ATGGCTTTGGATATAGTACAAGGCATGAATTATCTTCATCATTTCAACCCCCTTATTATTCATCGAGATCTGAAGTCTTCAAATCCCCTAGTTGATAAGAACTGGACTGTCAAGAAACAAAGGGAGTTGGAATCAAATAGCATAGAAAAGTTGCCGGAGGAGGCTGATGCAGCATGGAGAGGAACATGCAGAGATTTAGGTTTTTTGATGTTGTATTATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS PAS_9 Pkinase_Tyr

Protein Analysis

74

Amino Acids

8.69

Weight (kDa)

6.25

Isoelectric Point (pI)

22.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 38 1.4e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 2 cut(s) 46, 81
ApeKI GCWGC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 182
BfaI CTAG 1 cut(s) 89
BglII AGATCT 1 cut(s) 67
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 155
Bsp143I GATC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 107
BssMI GATC 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 109
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
Csp6I GTAC 1 cut(s) 17
CviAII CATG 3 cut(s) 25, 174, 186
CviJI RGCY 2 cut(s) 5, 164
CviKI_1 RGCY 2 cut(s) 5, 164
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 92
FaeI CATG 3 cut(s) 28, 177, 189
FaiI YATR 6 cut(s) 14, 26, 143, 175, 187, 219
FatI CATG 3 cut(s) 24, 173, 185
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 171
HapII CCGG 1 cut(s) 155
Hin1II CATG 3 cut(s) 28, 177, 189
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 65, 112
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 170, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
Hsp92II CATG 3 cut(s) 28, 177, 189
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 2 cut(s) 88, 168
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 89
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 2 cut(s) 26, 69
MflI RGATCY 1 cut(s) 67
MluCI AATT 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 151, 154, 173
MspI CCGG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 67
NlaIII CATG 3 cut(s) 28, 177, 189
NspI RCATGY 1 cut(s) 189
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 67
SetI ASST 1 cut(s) 202
SfaNI GCATC 1 cut(s) 157
SgeI CNNG 9 cut(s) 32, 37, 77, 101, 115, 124, 167, 186, 198
Sse9I AATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 28
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 1 cut(s) 131
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 26, 41, 50
XceI RCATGY 1 cut(s) 189
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.