Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

70260398 .. 70260634

Gene Structure 237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTTAGAAGACGGGAGAATTGTTGCTTTGAAGAAGTCTAAAATAGTTGATGAAAGCCAACTTTCAAAATTCATCAATGAGGTTGTCATTCTTTCCCAAATTAACCATAGAAATGTGGTTCAACTATTGGGTTGTTGTTTAGAGACAGAAGTTCCTATTTTGGTTTATAAATTTATACCAAATGAAACCCTTTCCAAGTATATCACAAAGCAAGTTGAAGACTTCACACTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

78

Amino Acids

8.94

Weight (kDa)

5.73

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 71	3.7e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 76	2.1e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	68, 170
AgsI	TTSAA	4 cut(s)	31, 66, 122, 218
Alw26I	GTCTC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	68, 170
BbsI	GAAGAC	2 cut(s)	15, 225
BcoDI	GTCTC	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	15, 225
BsmAI	GTCTC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	137
BstV2I	GAAGAC	2 cut(s)	15, 225
CviAII	CATG	1 cut(s)	234
CviJI	RGCY	1 cut(s)	57
CviKI_1	RGCY	1 cut(s)	57
FaeI	CATG	1 cut(s)	237
FaiI	YATR	5 cut(s)	108, 168, 176, 201, 235
FatI	CATG	1 cut(s)	233
Hin1II	CATG	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	237
MboII	GAAGA	3 cut(s)	20, 43, 230
MluCI	AATT	4 cut(s)	18, 68, 99, 170
MnlI	CCTC	1 cut(s)	73
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	2 cut(s)	111, 232
NlaIII	CATG	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	168
RseI	CAYNNNNRTG	2 cut(s)	111, 232
SaqAI	TTAA	1 cut(s)	102
SetI	ASST	1 cut(s)	84
SgeI	CNNG	3 cut(s)	25, 208, 224
SmiMI	CAYNNNNRTG	2 cut(s)	111, 232
Sse9I	AATT	4 cut(s)	18, 68, 99, 170
TasI	AATT	4 cut(s)	18, 68, 99, 170
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TspDTI	ATGAA	3 cut(s)	61, 66, 198
XapI	RAATTY	2 cut(s)	68, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.