Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

76782437 .. 76783028

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAACTCAAAAGTTTTAGACTTTGGGATGGCAAGAATTTTTGGGGTGGATCAAACTGAAGGAAACACCAACAGGGTTGTTGGAACATACTACATGTCACCTGAGTATGCACTTTATGACCATTTTTCGGAGAAATTGGATGTATTTGGCTTTGGAGTGTTGTTGTTAGCGATTGCCTGGAAATTATGGAAAGAAGGCAGAGGAATCGAAGTGGTTGACGCATCAGTGAGAGAAACAAGCCAGTTTCATGAAGCTAGCTTTAAGGTGTATCCATGTAGGCTTTTTGTGTGTTCAAGAAGCTCCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

102

Amino Acids

11.67

Weight (kDa)

6.72

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 60	4.6e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 58	1.7e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	294
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	3 cut(s)	254, 258, 300
AluI	AGCT	3 cut(s)	254, 258, 300
AlwI	GGATC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	90
AsuNHI	GCTAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	230
BmtI	GCTAGC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	33, 145
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	247
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	33, 145
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	33, 145
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	256
CciI	TCATGA	1 cut(s)	247
CseI	GACGC	1 cut(s)	227
CviAII	CATG	3 cut(s)	94, 248, 273
CviJI	RGCY	6 cut(s)	150, 240, 254, 258, 280, 300
CviKI_1	RGCY	6 cut(s)	150, 240, 254, 258, 280, 300
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	176
FaeI	CATG	3 cut(s)	97, 251, 276
FaiI	YATR	7 cut(s)	88, 95, 108, 117, 187, 249, 274
FatI	CATG	3 cut(s)	93, 247, 272
FokI	GGATG	2 cut(s)	40, 152
FspBI	CTAG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	97, 251, 276
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	204
HphI	GGTGA	1 cut(s)	90
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	248, 294
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	53, 188
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	97, 251, 276
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	5 cut(s)	58, 114, 163, 190, 254
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MluCI	AATT	3 cut(s)	36, 134, 182
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	49
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	97, 251, 276
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	97
PagI	TCATGA	1 cut(s)	247
PciI	ACATGT	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	204
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	5 cut(s)	103, 256, 260, 267, 302
SfaNI	GCATC	1 cut(s)	230
Sse9I	AATT	3 cut(s)	36, 134, 182
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	176
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	36, 134, 182
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	3 cut(s)	17, 236, 264
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	97
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.