RchiOBHm_Chr2g0161071

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Reverse (-)
76941946 .. 76942953
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52944

Sequence Viewer

Length: 489 bp
ATGCGGTTTAACATCATTTTAGGAATTGCTCGAGAACTTCTTTATCTTCATCAAGTTTCCAGGTTGAGGATCATTCATAGAGATTTGAAAAACAGCAACTTTCTTTTGGATGAGGAGATGAACCCCAAAATATCTGACTTTGGCTTGGCCAGGATTGTTGGAGGCAAAGAAACAGAGGCAAACACAAATACAGTACCAGGAACCTGGATTTTATCAGCATGGGAACTCTGGACAGAAGACAAGGTATTGGATTTAATGGACAAGAATTTGGAAGGAAGTTGTTACAGAAGTGAATTTATAAAGTGTGTAAATGTTGGGCTCTTATGCGTACAAGAAGATCCGGTTGATCGCCCTATGATGTCAAATGTTATTACCCTGCTTGACAGTGAAACTGCAATCCCTGCAACTCCTATACAAGCAGCCTTTTTCATGAGAGGCAATTCTAGCACAGCTGCTTCTTCTTTAAGCGAGAAACAAATTCTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

162

Amino Acids

18.24

Weight (kDa)

5.22

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 81 4.1e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 4 - 68 1.3e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 77, 332
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 3 cut(s) 265, 293, 477
AfaI GTAC 2 cut(s) 195, 330
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 4 cut(s) 59, 149, 196, 203
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
AlwI GGATC 2 cut(s) 77, 332
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 419, 452
ApoI RAATTY 3 cut(s) 265, 293, 477
AvaI CYCGRG 1 cut(s) 30
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 431, 439
BciT130I CCWGG 4 cut(s) 61, 151, 198, 205
BfaI CTAG 1 cut(s) 444
BisI GCNGC 2 cut(s) 420, 453
BlsI GCNGC 2 cut(s) 421, 454
Bme1390I CCNGG 4 cut(s) 61, 151, 198, 205
BmeT110I CYCGRG 1 cut(s) 30
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 4 cut(s) 61, 151, 198, 205
BpiI GAAGAC 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 4 cut(s) 61, 151, 198, 205
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 2 cut(s) 431, 439
BshFI GGCC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 66
BsnI GGCC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 69, 337, 346
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 149
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 2 cut(s) 77, 332
BssMI GATC 3 cut(s) 69, 337, 346
Bst2UI CCWGG 4 cut(s) 61, 151, 198, 205
Bst4CI ACNGT 2 cut(s) 193, 386
BstAPI GCANNNNNTGC 1 cut(s) 401
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 72, 340, 349
BstMBI GATC 3 cut(s) 69, 337, 346
BstMWI GCNNNNNNNGC 2 cut(s) 401, 444
BstNI CCWGG 4 cut(s) 61, 151, 198, 205
BstSCI CCNGG 4 cut(s) 59, 149, 196, 203
BstV1I GCAGC 2 cut(s) 431, 439
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 391
CciI TCATGA 1 cut(s) 429
Csp6I GTAC 2 cut(s) 194, 329
CviAII CATG 2 cut(s) 219, 430
CviJI RGCY 5 cut(s) 144, 149, 319, 422, 452
CviKI_1 RGCY 5 cut(s) 144, 149, 319, 422, 452
CviQI GTAC 2 cut(s) 194, 329
DpnI GATC 3 cut(s) 71, 339, 348
DpnII GATC 3 cut(s) 69, 337, 346
EaeI YGGCCR 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 30
EcoRII CCWGG 4 cut(s) 59, 149, 196, 203
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 2 cut(s) 222, 433
FaiI YATR 7 cut(s) 78, 220, 299, 325, 356, 413, 431
FatI CATG 2 cut(s) 218, 429
Fnu4HI GCNGC 2 cut(s) 420, 453
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 420, 453
FspBI CTAG 1 cut(s) 444
GluI GCNGC 2 cut(s) 420, 453
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 341
Hin1II CATG 2 cut(s) 222, 433
HpaII CCGG 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 136, 483
Hpy188III TCNNGA 3 cut(s) 32, 229, 430
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 193, 386
HpyCH4V TGCA 2 cut(s) 395, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 444
Hsp92II CATG 2 cut(s) 222, 433
Kzo9I GATC 3 cut(s) 69, 337, 346
Lsp1109I GCAGC 2 cut(s) 431, 439
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 281
MalI GATC 3 cut(s) 71, 339, 348
MboI GATC 3 cut(s) 69, 337, 346
MboII GAAGA 4 cut(s) 38, 248, 347, 450
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 321
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 5 cut(s) 24, 265, 293, 439, 477
MluNI TGGCCA 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 5 cut(s) 60, 106, 155, 169, 428
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
MseI TTAA 3 cut(s) 9, 254, 464
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 4 cut(s) 61, 151, 198, 205
MvaI CCWGG 4 cut(s) 61, 151, 198, 205
MwoI GCNNNNNNNGC 2 cut(s) 401, 444
NdeII GATC 3 cut(s) 69, 337, 346
NlaIII CATG 2 cut(s) 222, 433
NlaIV GGNNCC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 30
PagI TCATGA 1 cut(s) 429
PkrI GCNGC 2 cut(s) 421, 454
PsiI TTATAA 1 cut(s) 299
Psp6I CCWGG 4 cut(s) 59, 149, 196, 203
PspGI CCWGG 4 cut(s) 59, 149, 196, 203
PspN4I GGNNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 195, 330
RsaNI GTAC 2 cut(s) 194, 329
SaqAI TTAA 3 cut(s) 9, 254, 464
SatI GCNGC 2 cut(s) 420, 453
Sau3AI GATC 3 cut(s) 69, 337, 346
ScrFI CCNGG 4 cut(s) 61, 151, 198, 205
SduI GDGCHC 1 cut(s) 321
SetI ASST 4 cut(s) 65, 206, 246, 454
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 5 cut(s) 24, 265, 293, 439, 477
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 4 cut(s) 59, 149, 196, 203
TaaI ACNGT 2 cut(s) 193, 386
TaqI TCGA 1 cut(s) 31
TasI AATT 5 cut(s) 24, 265, 293, 439, 477
Tru1I TTAA 3 cut(s) 9, 254, 464
Tru9I TTAA 3 cut(s) 9, 254, 464
TscAI CASTG 1 cut(s) 391
TseI GCWGC 2 cut(s) 419, 452
TspDTI ATGAA 4 cut(s) 38, 65, 134, 418
TspRI CASTG 1 cut(s) 391
XapI RAATTY 3 cut(s) 265, 293, 477
XhoI CTCGAG 1 cut(s) 30
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.