Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

80375412 .. 80375666

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTGTGTGGCCTTTACCCATATGTGTTGTGGTGATTTAAGTAAAAGATTCAGCGTGCTACCATCAAACGCTGCCATTGAACTTAGTTTTGAAGCAGTATCGGAATACTCTGCCCCAAAAGCATTTTACATAACAGGTCGGTCAATGGGGCCGAACTTAACCATCAACAACAGCTACAATCTCACCTGGGCAATTCCTGTGCACTCAAACTTCTCATATCTGGTCAGGCTGCACTTTTGTGAGTTCGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

84

Amino Acids

9.43

Weight (kDa)

6.24

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	80, 92
AjnI	CCWGG	1 cut(s)	185
AleI	CACNNNNGTG	1 cut(s)	237
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw21I	GWGCWC	1 cut(s)	204
Alw44I	GTGCAC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	9, 149
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	71, 229
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	44, 175
BaeGI	GKGCMC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	58, 216
BccI	CCATC	2 cut(s)	70, 170
BciT130I	CCWGG	1 cut(s)	187
BisI	GCNGC	2 cut(s)	72, 230
BlsI	GCNGC	2 cut(s)	73, 231
Bme1390I	CCNGG	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	58, 216
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	11, 151
BsiHKAI	GWGCWC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	11, 151
Bsp1286I	GDGCHC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	11, 151
BspLI	GGNNCC	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	58, 216
BsuRI	GGCC	2 cut(s)	11, 151
Cac8I	GCNNGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	149
CviJI	RGCY	4 cut(s)	11, 151, 174, 229
CviKI_1	RGCY	4 cut(s)	11, 151, 174, 229
DdeI	CTNAG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	185
FaiI	YATR	4 cut(s)	21, 23, 131, 217
FauNDI	CATATG	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	72, 230
Fsp4HI	GCNGC	2 cut(s)	72, 230
GluI	GCNGC	2 cut(s)	72, 230
HaeIII	GGCC	2 cut(s)	11, 151
HinfI	GANTC	2 cut(s)	48, 248
HphI	GGTGA	2 cut(s)	44, 175
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	202, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	120, 172, 199, 206, 210, 211
Lsp1109I	GCAGC	2 cut(s)	58, 216
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	192
MseI	TTAA	3 cut(s)	38, 158, 253
MslI	CAYNNNNRTG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	150
OliI	CACNNNNGTG	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	73, 231
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	38, 158, 253
SatI	GCNGC	2 cut(s)	72, 230
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	3 cut(s)	139, 176, 188
SgeI	CNNG	7 cut(s)	67, 147, 198, 199, 209, 233, 238
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	185
TaqI	TCGA	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	3 cut(s)	38, 158, 253
Tru9I	TTAA	3 cut(s)	38, 158, 253
TseI	GCWGC	2 cut(s)	71, 229
VneI	GTGCAC	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.