Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

80379239 .. 80379487

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53337

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGTAATATCACAATGTCCAAGACCCAGATTAGCACGAAGGTGAAGGGTAGTTTCAGATATTTTGACCCTGATTACTACCGATGTCAACAATTAATTGAGAAGTCCGATGTGGACTCATTTAGTGTAGTTTTATGCGAAGTATTGTGTGGGAGGTCAACTGTGACCATTGTGGATAATGATCGAGTTGGCTTGGCTAGATGGGCTAAAAGGTGTCATCGCAATGGGAAACTTGATCAGATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

82

Amino Acids

9.39

Weight (kDa)

9.04

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AleI	CACNNNNGTG	1 cut(s)	41
AseI	ATTAAT	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	55
BccI	CCATC	1 cut(s)	195
BclI	TGATCA	1 cut(s)	235
BfaI	CTAG	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	181, 235
BsrDI	GCAATG	1 cut(s)	229
BssMI	GATC	2 cut(s)	181, 235
Bst4CI	ACNGT	1 cut(s)	163
BstKTI	GATC	2 cut(s)	184, 238
BstMBI	GATC	2 cut(s)	181, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	203
CviJI	RGCY	3 cut(s)	192, 197, 206
CviKI_1	RGCY	3 cut(s)	192, 197, 206
DpnI	GATC	2 cut(s)	183, 237
DpnII	GATC	2 cut(s)	181, 235
FaiI	YATR	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	235
FspBI	CTAG	1 cut(s)	198
HincII	GTYRAC	2 cut(s)	89, 159
HindII	GTYRAC	2 cut(s)	89, 159
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	89, 115, 159
Hpy188I	TCNGA	3 cut(s)	59, 109, 240
Hpy8I	GTNNAC	3 cut(s)	89, 115, 159
HpyAV	CCTTC	2 cut(s)	34, 40
HpyCH4III	ACNGT	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	181, 235
LpnPI	CCDG	2 cut(s)	41, 84
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	183, 237
MboI	GATC	2 cut(s)	181, 235
MluCI	AATT	2 cut(s)	92, 96
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	2 cut(s)	41, 222
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	2 cut(s)	181, 235
NmuCI	GTSAC	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	41
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PshBI	ATTAAT	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	41, 222
SaqAI	TTAA	1 cut(s)	95
Sau3AI	GATC	2 cut(s)	181, 235
SchI	GAGTC	1 cut(s)	110
SetI	ASST	3 cut(s)	45, 158, 215
SgeI	CNNG	8 cut(s)	34, 40, 49, 83, 197, 205, 210, 245
SmiMI	CAYNNNNRTG	2 cut(s)	41, 222
Sse9I	AATT	2 cut(s)	92, 96
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	184
TasI	AATT	2 cut(s)	92, 96
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	95
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.