RchiOBHm_Chr2g0165481

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
N/A
Physical Location & Seq
Forward (+)
80409071 .. 80409319
249 bp
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UTR
Exon/CDS
Intron
PRQ53343

Sequence Viewer

Length: 249 bp
ATGAAGGGATATGAGTGGTGGATTATCACCAAACCAAAGGAACCAAATCTTCCTTGGAAACTACAGCTTCAGACTTGTATTGGTGCAGCACAAGGTTTGCACTACCTTCACACAAGTATCGAAGGTACCATGATTCACCGCGACGTAAAGGGCGCAAACATATTATTAGATGAGAAATGGGTAGCCAAGGTTTTGGATTTTGGGTTGTCAAAAATGGGTAATTATTACAATTTCCAAGACCCACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.53

Weight (kDa)

7.89

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 14 - 73 4.5e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 30 - 73 1.8e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 125
AccII CGCG 1 cut(s) 141
AciI CCGC 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 127
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 19, 128
BaeI ACNNNNGTAYC 2 cut(s) 100, 133
BanI GGYRCC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 62
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 42, 127
BsaJI CCNNGG 2 cut(s) 53, 186
BseDI CCNNGG 2 cut(s) 53, 186
BseXI GCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 125
BspACI CCGC 1 cut(s) 139
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 42, 127
BspT107I GGYRCC 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 53, 186
BssT1I CCWWGG 2 cut(s) 53, 186
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 193
CfoI GCGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 126
CviAII CATG 1 cut(s) 130
CviJI RGCY 2 cut(s) 67, 185
CviKI_1 RGCY 2 cut(s) 67, 185
CviQI GTAC 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 53, 186
Eco57I CTGAAG 1 cut(s) 53
EcoT14I CCWWGG 2 cut(s) 53, 186
ErhI CCWWGG 2 cut(s) 53, 186
FaeI CATG 1 cut(s) 133
FaiI YATR 3 cut(s) 12, 131, 161
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
GlaI GCGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 1 cut(s) 133
HphI GGTGA 2 cut(s) 19, 128
Hpy188I TCNGA 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 116, 116
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 86, 100
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 153
KpnI GGTACC 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 98
MaeII ACGT 1 cut(s) 144
MboII GAAGA 1 cut(s) 41
MluCI AATT 2 cut(s) 220, 229
MvnI CGCG 1 cut(s) 141
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 2 cut(s) 42, 127
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 42, 127
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SatI GCNGC 1 cut(s) 87
SetI ASST 6 cut(s) 69, 97, 108, 127, 147, 192
SfcI CTRYAG 1 cut(s) 62
SgeI CNNG 7 cut(s) 66, 87, 104, 126, 142, 152, 199
Sse9I AATT 2 cut(s) 220, 229
SsiI CCGC 1 cut(s) 139
StyI CCWWGG 2 cut(s) 53, 186
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 220, 229
TfiI GAWTC 1 cut(s) 133
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.