RchiOBHm_Chr3g0453801

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Reverse (-)
4122715 .. 4123205
491 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42087

Sequence Viewer

Length: 459 bp
ATGGTTACTAAAACACCTCTTGAGACAGCCACTTCCAAAACTACTGATATTTCAAAACTGAATCGTCTTCAAGTTGAGATAAAGGAACAACTCAAAGGAAAGAAGTTTTTGTTTGTGTTGGATGACGTTTGGAATGAGAACTATGATGATTGGAGTCTACTACAGGCTCCTTTTATTTCTGGGGCTGGAGGAAGCAATTTCATAGTAACAACACACAACTTAAGGGTTGCTTCTATGATGCACACTCTTCCTATTCACATTTTGGGAAAGTTGTCGAATGAAGACTGGTGGTTGTTACTTGCAAAACATGCCTTTAAAAATGGGAAGCCTTCTGCATTTCCAAACTTGGAAGAAATTGGTAAAAAGATAGTAGTTAAGTATAACGGTCTCCCTTTAGCTGCAAAAACACTTGGGGGTCTTTTACGTGGCATAATATATAGATTCAGAGGATTTGAATAG

Protein Analysis

152

Amino Acids

17.13

Weight (kDa)

9.58

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 13 - 107 5.8e-14 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 157
AflII CTTAAG 1 cut(s) 220
AgsI TTSAA 3 cut(s) 54, 71, 455
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 2 cut(s) 17, 392
ApeKI GCWGC 1 cut(s) 398
BbsI GAAGAC 2 cut(s) 59, 288
BbvI GCAGC 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 17, 392
BfmI CTRYAG 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 220
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 59, 288
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 392
Bse1I ACTGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 385
BsmAI GTCTC 2 cut(s) 17, 392
Bso31I GGTCTC 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 252
BstAFI CTTAAG 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 425
BstF5I GGATG 1 cut(s) 127
BstMAI GTCTC 2 cut(s) 17, 392
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNSI RCATGY 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 2 cut(s) 59, 288
BtsCI GGATG 1 cut(s) 127
CviAII CATG 1 cut(s) 308
CviJI RGCY 5 cut(s) 29, 167, 185, 328, 398
CviKI_1 RGCY 5 cut(s) 29, 167, 185, 328, 398
DraI TTTAAA 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 392
FaeI CATG 1 cut(s) 311
FaiI YATR 8 cut(s) 144, 203, 236, 309, 381, 431, 436, 438
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FatI CATG 1 cut(s) 307
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 207
Hin1II CATG 1 cut(s) 311
HinfI GANTC 3 cut(s) 61, 154, 441
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 446
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 2 cut(s) 126, 424
HpyCH4V TGCA 4 cut(s) 241, 302, 335, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpySE526I ACGT 2 cut(s) 126, 424
Hsp92II CATG 1 cut(s) 311
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 149, 165, 171, 271
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 228
MaeII ACGT 2 cut(s) 126, 424
MaeIII GTNAC 3 cut(s) 4, 205, 294
MboII GAAGA 4 cut(s) 59, 239, 293, 362
MluCI AATT 2 cut(s) 196, 354
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 3 cut(s) 27, 182, 440
MseI TTAA 3 cut(s) 221, 315, 375
MspCI CTTAAG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 308
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 168
NspI RCATGY 1 cut(s) 311
PfeI GAWTC 2 cut(s) 61, 441
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Ppu21I YACGTR 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 221, 315, 375
SatI GCNGC 1 cut(s) 399
SchI GAGTC 1 cut(s) 163
SetI ASST 4 cut(s) 19, 129, 400, 427
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 161
SmlI CTYRAG 2 cut(s) 20, 220
SmoI CTYRAG 2 cut(s) 20, 220
Sse9I AATT 2 cut(s) 196, 354
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 2 cut(s) 129, 427
TaqI TCGA 1 cut(s) 275
TasI AATT 2 cut(s) 196, 354
TfiI GAWTC 2 cut(s) 61, 441
Tru1I TTAA 3 cut(s) 221, 315, 375
Tru9I TTAA 3 cut(s) 221, 315, 375
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 190, 294
Vha464I CTTAAG 1 cut(s) 220
XceI RCATGY 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.