RchiOBHm_Chr3g0476691

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
N/A
Physical Location & Seq
Forward (+)
22684155 .. 22684853
699 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44208

Sequence Viewer

Length: 315 bp
ATGTATTATATGGTATCGTACAACACCAATGTGATTAAAAGAACGAGGTTACTCAATTCTGGGTTATATCAGCACCTAACATGGAATGATGCTGACCATCAATGGACGGAAGACTTTGCTGCTCCAAGATACCGGTGTGACTGGTATGCACATTGCGGTGCCAATAGCAAATGTAGCCCTGACAACACTCTTCTGTTTGAGGGTGACTGTCTCCCCGGATATGAACCAAAATATGTAAATAAGTGGAATCAGAATGATGGGTCAGATGGATGTGTGAGTAAGCAAATAGATGCATCCAAGTGTGAGCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

104

Amino Acids

12.02

Weight (kDa)

5.7

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 6 - 77 4.3e-13 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 1 cut(s) 156
AfaI GTAC 1 cut(s) 20
AgeI ACCGGT 1 cut(s) 132
AleI CACNNNNGTG 1 cut(s) 29
Alw26I GTCTC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 119
AsiGI ACCGGT 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 215
BaeI ACNNNNGTAYC 2 cut(s) 121, 154
BanI GGYRCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 106
BccI CCATC 3 cut(s) 105, 251, 260
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 3 cut(s) 79, 280, 302
BpiI GAAGAC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 2 cut(s) 275, 293
BseMI GCAATG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 132
BsiSI CCGG 2 cut(s) 133, 216
BsmAI GTCTC 1 cut(s) 215
BspACI CCGC 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 195
BstF5I GGATG 2 cut(s) 275, 293
BstMAI GTCTC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 275, 293
Cfr10I RCCGGY 1 cut(s) 132
Csp6I GTAC 1 cut(s) 19
CspAI ACCGGT 1 cut(s) 132
CviAII CATG 2 cut(s) 81, 308
CviJI RGCY 1 cut(s) 177
CviKI_1 RGCY 1 cut(s) 177
CviQI GTAC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 295
FaeI CATG 2 cut(s) 84, 311
FaiI YATR 8 cut(s) 9, 11, 67, 82, 147, 222, 234, 309
FatI CATG 2 cut(s) 80, 307
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 280, 282
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HapII CCGG 2 cut(s) 133, 216
Hin1II CATG 2 cut(s) 84, 311
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 133, 216
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 252, 265
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 149, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 84, 311
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 5 cut(s) 45, 127, 146, 192, 229
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 3 cut(s) 79, 280, 302
MaeIII GTNAC 3 cut(s) 48, 137, 203
MboII GAAGA 2 cut(s) 122, 182
MluCI AATT 1 cut(s) 55
MnlI CCTC 2 cut(s) 39, 193
Mph1103I ATGCAT 1 cut(s) 295
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 3 cut(s) 29, 156, 298
MspI CCGG 2 cut(s) 133, 216
MspR9I CCNGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 174
NciI CCSGG 1 cut(s) 216
NlaIII CATG 2 cut(s) 84, 311
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 2 cut(s) 137, 203
NsiI ATGCAT 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 29
PfeI GAWTC 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 160
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 3 cut(s) 29, 156, 298
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 216
SetI ASST 2 cut(s) 50, 78
SfaNI GCATC 3 cut(s) 79, 280, 302
SmiMI CAYNNNNRTG 3 cut(s) 29, 156, 298
Sse9I AATT 1 cut(s) 55
SsiI CCGC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 209
TasI AATT 1 cut(s) 55
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 2 cut(s) 137, 203
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 2 cut(s) 137, 203
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.