Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

33868354 .. 33872685

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45132

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCCTCTGTAAGTGTGGCTCCTGCATCTGGATTAAGAGATCGCGTTGGAAATACAATTGCTGTCGATAGTTTGCCCAGTGAGATGAATGACATGAAAATTAGGGATGACAAGGAAATGGAAGCAACTGTTGTTGATGGTAATGGAACAGAAACGGGTCATATAATTGTCACAACTATTGGTGGAAGAAATGGCCAGCCAAAACAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGACATGGATCTTTTGGATTGGTTTTTCAGGCCAAGTGTTTAGAAACTGGAGAAACTGTTGCTATTAAAAAGGTTCTTCAAGACAAAAGGTACAAGAATCGGGAGTTGCAAACCATGCGTCTTCTAGACCACCCCAACATTGTGTCTCTTAAACATTGTTTCTTTTCCACAACTGAAAAAGATGAGCTATACCTGAACCTTGTGCTTGAGTATGTCCCTGAGACTGTTCATAGAGTGATCAAACATTATAGTAAGATGAGCCAGAGGATGCCGCTGATATACGTTAAACTCTATTCTTACCAGATTTGTAGAGCACTTGCTTACATTCACAACAGTATTGGAGTGTGCCACAGGGACATAAAGCCTCAGAATTTGTTGGTCAATCCACATACTCACCAGCTTAAAATCTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAGGGGGAACCCAACATATCTTACATCTGTTCAAGATACTATCGAGCACCTGAACTTATATTTGGTGCAACAGAGTATACCACAGCCATTGACATCTGGTCTGCTGGATGTGTTCTAGCTGAACTTCTACTTGGACAGCCTCTATTTCCTGGAGAAAGTGGAGTAGACCAGCTTGTTGAAATCATTAAGGTTTTAGGTACCCCAACTAGAGAGGAAATAAAATGCATGAACCCTAACTACACAGAATTTAAATTCCCTCAAATTAAAGCTCATCCATGGCACAAGATATTCCACAAGCGCATGCCCCCGGAAGCCGTGGATCTCGTATCGAGGCTACTCCAGTACTCTCCAAACCTCAGAAGTACAGCTTTGGAGGCCTTGGTTCATCCCTTTTTTGATGAGTTACGGGACCCTAATACCCGCCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAATTTTAAGGCTCATGAACTCAAGGGAGTACCTGCAGAGATGATTGTTAAGCTGATACCAGAGCATGCAAGAAAACAGTGTGCCTTCCTTGCGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

409

Amino Acids

46.24

Weight (kDa)

8.7

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 357	2.6e-62	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 275	2.6e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1171
Acc65I	GGTACC	1 cut(s)	872
AccB1I	GGYRCC	1 cut(s)	872
AccI	GTMKAC	2 cut(s)	752, 840
AccII	CGCG	1 cut(s)	45
AciI	CCGC	2 cut(s)	509, 1096
AclWI	GGATC	2 cut(s)	253, 1002
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	3 cut(s)	607, 920, 926
AfaI	GTAC	5 cut(s)	329, 874, 1019, 1039, 1161
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	317, 708, 854, 1132
AhdI	GACNNNNNGTC	1 cut(s)	772
AjnI	CCWGG	1 cut(s)	823
AjuI	GAANNNNNNNTTGG	4 cut(s)	720, 752, 789, 821
AluBI	AGCT	8 cut(s)	216, 424, 637, 794, 847, 944, 1043, 1183
AluI	AGCT	8 cut(s)	216, 424, 637, 794, 847, 944, 1043, 1183
Alw21I	GWGCWC	2 cut(s)	553, 724
Alw26I	GTCTC	2 cut(s)	387, 452
AlwI	GGATC	2 cut(s)	253, 1002
AoxI	GGCC	4 cut(s)	3, 193, 267, 1050
ApoI	RAATTY	3 cut(s)	607, 920, 926
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
Asp718I	GGTACC	1 cut(s)	872
AspLEI	GCGC	1 cut(s)	975
AspS9I	GGNCC	1 cut(s)	1084
AsuC2I	CCSGG	1 cut(s)	983
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	1084
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	872
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	553, 724
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	974
BciT130I	CCWGG	1 cut(s)	825
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	983
BcoDI	GTCTC	2 cut(s)	387, 452
BfaI	CTAG	3 cut(s)	362, 791, 882
BfmI	CTRYAG	1 cut(s)	1164
BfuAI	ACCTGC	1 cut(s)	1171
BisI	GCNGC	1 cut(s)	509
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	510
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	2 cut(s)	825, 983
Bme18I	GGWCC	1 cut(s)	1084
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	1084
BmiI	GGNNCC	5 cut(s)	21, 684, 874, 1085, 1086
BmrFI	CCNGG	2 cut(s)	825, 983
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	35, 495
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	3 cut(s)	306, 846, 998
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	464, 1136
BpuMI	CCSGG	1 cut(s)	983
BsaJI	CCNNGG	4 cut(s)	950, 981, 990, 1053
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	3 cut(s)	78, 289, 1015
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	4 cut(s)	950, 981, 990, 1053
BseGI	GGATG	5 cut(s)	112, 510, 788, 946, 1060
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	4 cut(s)	216, 447, 617, 1045
BseNI	ACTGG	3 cut(s)	78, 289, 1015
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	4 cut(s)	5, 195, 269, 1052
BshNI	GGYRCC	1 cut(s)	872
BsiHKAI	GWGCWC	2 cut(s)	553, 724
BsiSI	CCGG	1 cut(s)	983
BslFI	GGGAC	3 cut(s)	437, 605, 1097
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	387, 452
BsmFI	GGGAC	3 cut(s)	437, 605, 1097
BsnI	GGCC	4 cut(s)	5, 195, 269, 1052
Bsp1286I	GDGCHC	2 cut(s)	553, 724
Bsp143I	GATC	4 cut(s)	40, 245, 474, 994
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	2 cut(s)	509, 1096
BspANI	GGCC	4 cut(s)	5, 195, 269, 1052
BspCNI	CTCAG	4 cut(s)	217, 448, 616, 1044
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	2 cut(s)	1144, 1226
BspLI	GGNNCC	5 cut(s)	21, 684, 874, 1085, 1086
BspMAI	CTGCAG	1 cut(s)	1168
BspMI	ACCTGC	1 cut(s)	1171
BspPI	GGATC	2 cut(s)	253, 1002
BspT107I	GGYRCC	1 cut(s)	872
BsrI	ACTGG	3 cut(s)	78, 289, 1015
BssECI	CCNNGG	4 cut(s)	950, 981, 990, 1053
BssMI	GATC	4 cut(s)	40, 245, 474, 994
BssNAI	GTATAC	1 cut(s)	753
BssT1I	CCWWGG	2 cut(s)	950, 1053
Bst1107I	GTATAC	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	5 cut(s)	130, 295, 463, 572, 1209
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	4 cut(s)	197, 977, 1100, 1197
BstDEI	CTNAG	4 cut(s)	225, 456, 603, 1031
BstDSI	CCRYGG	2 cut(s)	950, 990
BstF5I	GGATG	5 cut(s)	112, 510, 788, 946, 1060
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	4 cut(s)	43, 248, 477, 997
BstMAI	GTCTC	2 cut(s)	387, 452
BstMBI	GATC	4 cut(s)	40, 245, 474, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 1049, 1220
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	2 cut(s)	979, 1199
BstSCI	CCNGG	2 cut(s)	823, 981
BstSFI	CTRYAG	1 cut(s)	1164
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	245, 994
BstYI	RGATCY	2 cut(s)	245, 994
BstZ17I	GTATAC	1 cut(s)	753
BsuRI	GGCC	4 cut(s)	5, 195, 269, 1052
BtgI	CCRYGG	2 cut(s)	950, 990
BtsCI	GGATG	5 cut(s)	112, 510, 788, 946, 1060
BtsIMutI	CAGTG	2 cut(s)	85, 1214
BveI	ACCTGC	1 cut(s)	1171
Cac8I	GCNNGC	4 cut(s)	197, 977, 1100, 1197
CciI	TCATGA	2 cut(s)	1144, 1226
CfoI	GCGC	1 cut(s)	975
Cfr13I	GGNCC	1 cut(s)	1084
CseI	GACGC	2 cut(s)	344, 1212
Csp6I	GTAC	5 cut(s)	328, 873, 1018, 1038, 1160
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviAII	CATG	9 cut(s)	94, 242, 352, 901, 951, 976, 1145, 1196, 1227
CviQI	GTAC	5 cut(s)	328, 873, 1018, 1038, 1160
DdeI	CTNAG	4 cut(s)	225, 456, 603, 1031
DpnI	GATC	4 cut(s)	42, 247, 476, 996
DpnII	GATC	4 cut(s)	40, 245, 474, 994
DraI	TTTAAA	1 cut(s)	925
DriI	GACNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	772
Eco130I	CCWWGG	2 cut(s)	950, 1053
Eco147I	AGGCCT	1 cut(s)	1052
Eco47I	GGWCC	1 cut(s)	1084
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoRII	CCWGG	1 cut(s)	823
EcoT14I	CCWWGG	2 cut(s)	950, 1053
EcoT22I	ATGCAT	1 cut(s)	902
ErhI	CCWWGG	2 cut(s)	950, 1053
FaeI	CATG	9 cut(s)	97, 245, 355, 904, 954, 979, 1148, 1199, 1230
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FaqI	GGGAC	3 cut(s)	437, 605, 1097
FatI	CATG	9 cut(s)	93, 241, 351, 900, 950, 975, 1144, 1195, 1226
FauI	CCCGC	1 cut(s)	1103
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	2 cut(s)	752, 840
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	5 cut(s)	119, 517, 795, 933, 1047
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	3 cut(s)	362, 791, 882
GlaI	GCGC	1 cut(s)	974
GluI	GCNGC	1 cut(s)	509
GsuI	CTGGAG	3 cut(s)	306, 846, 998
HaeIII	GGCC	4 cut(s)	5, 195, 269, 1052
HapII	CCGG	1 cut(s)	983
HgaI	GACGC	2 cut(s)	344, 1212
HhaI	GCGC	1 cut(s)	975
Hin1II	CATG	9 cut(s)	97, 245, 355, 904, 954, 979, 1148, 1199, 1230
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	983
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	753, 841
Hpy188I	TCNGA	2 cut(s)	606, 1034
Hpy188III	TCNNGA	7 cut(s)	30, 317, 338, 362, 708, 1145, 1227
Hpy8I	GTNNAC	2 cut(s)	753, 841
HpyAV	CCTTC	2 cut(s)	1127, 1225
HpyCH4III	ACNGT	5 cut(s)	130, 295, 463, 572, 1209
HpyCH4IV	ACGT	2 cut(s)	519, 1111
HpyCH4V	TGCA	7 cut(s)	26, 346, 662, 743, 900, 1166, 1199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 1049, 1220
HpyF3I	CTNAG	4 cut(s)	225, 456, 603, 1031
HpySE526I	ACGT	2 cut(s)	519, 1111
Hsp92II	CATG	9 cut(s)	97, 245, 355, 904, 954, 979, 1148, 1199, 1230
HspAI	GCGC	1 cut(s)	973
KflI	GGGWCCC	1 cut(s)	1084
KpnI	GGTACC	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	40, 245, 474, 994
LmnI	GCTCC	1 cut(s)	25
LweI	GCATC	2 cut(s)	35, 495
MaeI	CTAG	3 cut(s)	362, 791, 882
MaeII	ACGT	2 cut(s)	519, 1111
MaeIII	GTNAC	3 cut(s)	169, 647, 1077
MalI	GATC	4 cut(s)	42, 247, 476, 996
MboI	GATC	4 cut(s)	40, 245, 474, 994
MboII	GAAGA	3 cut(s)	198, 305, 350
MfeI	CAATTG	1 cut(s)	57
MflI	RGATCY	2 cut(s)	245, 994
MhlI	GDGCHC	2 cut(s)	553, 724
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	8 cut(s)	57, 99, 165, 607, 920, 926, 936, 1132
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	2 cut(s)	28, 217
MnlI	CCTC	9 cut(s)	16, 495, 612, 825, 880, 942, 999, 1040, 1042
Mox20I	TGGCCA	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	902
MscI	TGGCCA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	1 cut(s)	983
MspR9I	CCNGG	2 cut(s)	825, 983
MunI	CAATTG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	352, 1049, 1220
NciI	CCSGG	1 cut(s)	983
NcoI	CCATGG	1 cut(s)	950
NdeII	GATC	4 cut(s)	40, 245, 474, 994
NlaIII	CATG	9 cut(s)	97, 245, 355, 904, 954, 979, 1148, 1199, 1230
NlaIV	GGNNCC	5 cut(s)	21, 684, 874, 1085, 1086
NmuCI	GTSAC	2 cut(s)	169, 647
NsiI	ATGCAT	1 cut(s)	902
NspI	RCATGY	2 cut(s)	979, 1199
PaeI	GCATGC	2 cut(s)	979, 1199
PagI	TCATGA	2 cut(s)	1144, 1226
PceI	AGGCCT	1 cut(s)	1052
PfeI	GAWTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	1 cut(s)	510
PpuMI	RGGWCCY	1 cut(s)	1084
Psp5II	RGGWCCY	1 cut(s)	1084
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	5 cut(s)	21, 684, 874, 1085, 1086
PspPI	GGNCC	1 cut(s)	1084
PspPPI	RGGWCCY	1 cut(s)	1084
PsrI	GAACNNNNNNTAC	2 cut(s)	896, 928
PstI	CTGCAG	1 cut(s)	1168
PsuI	RGATCY	2 cut(s)	245, 994
RsaI	GTAC	5 cut(s)	329, 874, 1019, 1039, 1161
RsaNI	GTAC	5 cut(s)	328, 873, 1018, 1038, 1160
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	4 cut(s)	40, 245, 474, 994
Sau96I	GGNCC	1 cut(s)	1084
ScaI	AGTACT	1 cut(s)	1019
ScrFI	CCNGG	2 cut(s)	825, 983
SduI	GDGCHC	2 cut(s)	553, 724
SfaNI	GCATC	2 cut(s)	35, 495
SfcI	CTRYAG	1 cut(s)	1164
SinI	GGWCC	1 cut(s)	1084
SmiI	ATTTAAAT	1 cut(s)	925
SmlI	CTYRAG	2 cut(s)	443, 1151
SmoI	CTYRAG	2 cut(s)	443, 1151
SphI	GCATGC	2 cut(s)	979, 1199
Sse9I	AATT	8 cut(s)	57, 99, 165, 607, 920, 926, 936, 1132
SseBI	AGGCCT	1 cut(s)	1052
SsiI	CCGC	2 cut(s)	509, 1096
SspMI	CTAG	3 cut(s)	362, 791, 882
StuI	AGGCCT	1 cut(s)	1052
StyD4I	CCNGG	2 cut(s)	823, 981
StyI	CCWWGG	2 cut(s)	950, 1053
SwaI	ATTTAAAT	1 cut(s)	925
TaaI	ACNGT	5 cut(s)	130, 295, 463, 572, 1209
TaiI	ACGT	2 cut(s)	522, 1114
TaqI	TCGA	3 cut(s)	66, 718, 1004
TasI	AATT	8 cut(s)	57, 99, 165, 607, 920, 926, 936, 1132
TatI	WGTACW	2 cut(s)	1017, 1037
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	1 cut(s)	334
TscAI	CASTG	2 cut(s)	85, 1214
TseFI	GTSAC	2 cut(s)	169, 647
Tsp45I	GTSAC	2 cut(s)	169, 647
TspDTI	ATGAA	6 cut(s)	101, 110, 455, 917, 1049, 1161
TspRI	CASTG	2 cut(s)	85, 1214
VpaK11BI	GGWCC	1 cut(s)	1084
XapI	RAATTY	3 cut(s)	607, 920, 926
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	2 cut(s)	979, 1199
XmiI	GTMKAC	2 cut(s)	752, 840
XspI	CTAG	3 cut(s)	362, 791, 882
ZrmI	AGTACT	1 cut(s)	1019
Zsp2I	ATGCAT	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.