RchiOBHm_Chr4g0389131

RESISTANCE protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Forward (+)
4273165 .. 4273984
820 bp
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UTR
Exon/CDS
Intron
PRQ36229

Sequence Viewer

Length: 243 bp
ATGAAGCAAAGCAAGCAGAATATGGCTTTTCTGACCAATGAAGCCAGTTCTTCATCTTCTTCTCTCCCACTTTCTTCTACTGATCACCATTCTACTGATCACCAAAATCATTACACATACGAGGTTTTCCTGAGTTTCCGTGGCGAGGATACGCGCTACGATTTTACAGATCATTTGTACAACGCTTTGTGTCTGAGGGGAATTAAGACCTTCAGAGATGATAAGCTTAGCATAGGACTATAG

Protein Analysis

80

Amino Acids

9.21

Weight (kDa)

6.15

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 40 - 76 1.4e-07 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
AspLEI GCGC 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 77, 92
BciVI GTATCC 1 cut(s) 142
BclI TGATCA 2 cut(s) 82, 97
BfmI CTRYAG 1 cut(s) 239
BfuI GTATCC 1 cut(s) 142
BlpI GCTNAGC 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 122, 185
BseNI ACTGG 1 cut(s) 45
Bsh1236I CGCG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 3 cut(s) 82, 97, 169
Bsp1720I GCTNAGC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 123, 186
BspFNI CGCG 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 3 cut(s) 82, 97, 169
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 3 cut(s) 131, 194, 227
BstDSI CCRYGG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 3 cut(s) 85, 100, 172
BstMBI GATC 3 cut(s) 82, 97, 169
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 239
BstUI CGCG 1 cut(s) 154
BsuI GTATCC 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 178
CviJI RGCY 3 cut(s) 26, 44, 226
CviKI_1 RGCY 3 cut(s) 26, 44, 226
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 131, 194, 227
DpnI GATC 3 cut(s) 84, 99, 171
DpnII GATC 3 cut(s) 82, 97, 169
Eco57I CTGAAG 1 cut(s) 196
FaiI YATR 4 cut(s) 23, 118, 233, 241
FbaI TGATCA 2 cut(s) 82, 97
GlaI GCGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 224
HphI GGTGA 2 cut(s) 77, 92
Hpy188I TCNGA 3 cut(s) 33, 195, 215
Hpy188III TCNNGA 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 3 cut(s) 131, 194, 227
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 2 cut(s) 82, 97
Kzo9I GATC 3 cut(s) 82, 97, 169
LpnPI CCDG 2 cut(s) 58, 143
MalI GATC 3 cut(s) 84, 99, 171
MboI GATC 3 cut(s) 82, 97, 169
MboII GAAGA 4 cut(s) 42, 48, 51, 66
MluCI AATT 1 cut(s) 201
MnlI CCTC 3 cut(s) 115, 139, 189
MseI TTAA 1 cut(s) 204
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 3 cut(s) 82, 97, 169
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 3 cut(s) 82, 97, 169
SetI ASST 3 cut(s) 126, 212, 228
SfcI CTRYAG 1 cut(s) 239
SgeI CNNG 7 cut(s) 25, 57, 133, 142, 152, 157, 165
Sse9I AATT 1 cut(s) 201
TasI AATT 1 cut(s) 201
TatI WGTACW 1 cut(s) 177
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 17, 42, 54
TspGWI ACGGA 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.