RchiOBHm_Chr4g0400741
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
18508167 .. 18509022
856 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37273

Sequence Viewer

Length: 354 bp
ATGGAAGAACATATTAACCCTTTGGCAGTGACTCATCTGCTTCAACACACTCTGAGAAGCTTATTGGAAGGTCATGGAGCTTATGACAGGTCAAGAGGGAACAGAAGGAACTGGATATTGGTTTTGGAAGATGGTTTCTGCAACTTTGGAGCACCTCACCAGCTCATGATCAGATCAACTCATCCACTGATGTCCCATGAGATCTACAACTGTGGAGAAGGATTGATAGGGAAAGTGGCAGCCGATCATAGTCGTAATTGGATATACAAAGAACCAAATGATCAGCATCAAGAAATCAACTTCTATCAGCACGGCACAACTCAGCTGACTTGGTACTATACATTTACTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.7

Weight (kDa)

6.34

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 335
AgsI TTSAA 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 4 cut(s) 60, 80, 163, 325
AluI AGCT 4 cut(s) 60, 80, 163, 325
Alw21I GWGCWC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 328
BclI TGATCA 2 cut(s) 168, 280
BglII AGATCT 1 cut(s) 201
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmsI GCATC 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 285
BseGI GGATG 1 cut(s) 181
BseJI GATNNNNATC 1 cut(s) 285
BseMII CTCAG 2 cut(s) 44, 335
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 154
BslFI GGGAC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 5 cut(s) 168, 173, 201, 244, 280
BspCNI CTCAG 2 cut(s) 45, 334
BspHI TCATGA 1 cut(s) 165
BsrI ACTGG 1 cut(s) 116
BssMI GATC 5 cut(s) 168, 173, 201, 244, 280
Bst4CI ACNGT 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 53, 321
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 5 cut(s) 171, 176, 204, 247, 283
BstMBI GATC 5 cut(s) 168, 173, 201, 244, 280
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 185
CciI TCATGA 1 cut(s) 165
Csp6I GTAC 1 cut(s) 334
CviAII CATG 3 cut(s) 74, 166, 197
CviJI RGCY 5 cut(s) 60, 80, 163, 242, 325
CviKI_1 RGCY 5 cut(s) 60, 80, 163, 242, 325
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 2 cut(s) 53, 321
DpnI GATC 5 cut(s) 170, 175, 203, 246, 282
DpnII GATC 5 cut(s) 168, 173, 201, 244, 280
FaeI CATG 3 cut(s) 77, 169, 200
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 73, 165, 196
FbaI TGATCA 2 cut(s) 168, 280
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
Hin1II CATG 3 cut(s) 77, 169, 200
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 31
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 54, 173
Hpy188III TCNNGA 3 cut(s) 93, 166, 290
HpyAV CCTTC 3 cut(s) 62, 99, 212
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 53, 321
Hsp92II CATG 3 cut(s) 77, 169, 200
Ksp22I TGATCA 2 cut(s) 168, 280
Kzo9I GATC 5 cut(s) 168, 173, 201, 244, 280
LmnI GCTCC 2 cut(s) 77, 149
LpnPI CCDG 3 cut(s) 73, 97, 173
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 28
MalI GATC 5 cut(s) 170, 175, 203, 246, 282
MboI GATC 5 cut(s) 168, 173, 201, 244, 280
MboII GAAGA 2 cut(s) 17, 140
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 89, 165
MseI TTAA 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 325
NdeII GATC 5 cut(s) 168, 173, 201, 244, 280
NlaIII CATG 3 cut(s) 77, 169, 200
NmuCI GTSAC 1 cut(s) 28
PagI TCATGA 1 cut(s) 165
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 325
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 5 cut(s) 168, 173, 201, 244, 280
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 154
SetI ASST 7 cut(s) 62, 73, 82, 92, 157, 165, 327
SfaNI GCATC 1 cut(s) 295
Sse9I AATT 1 cut(s) 256
TaaI ACNGT 1 cut(s) 212
TasI AATT 1 cut(s) 256
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 33, 192
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 28
TspRI CASTG 2 cut(s) 33, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.