RchiOBHm_Chr4g0403011

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
N/A
Physical Location & Seq
Reverse (-)
21987899 .. 21990845
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37478

Sequence Viewer

Length: 1155 bp
ATGCTGCATGAATTTTCATTTATGTCCTTCCCTAATCTTGAATATCTTGACCTCAGCTTGAATGATCTCTTTGATGCCATCCCGCCTCAGATTAGTTCCCTCTCCAAACTCATCTATCTTGATATGTCTTATAATCAGTTTTCTGGAATAAGTCCACCAGAAATTGGTCATCTAAAAAATCTTGAGGTCCTGCACCTAAATGAAAACCAGTTAAATGGCTCAATTCCTCAAGAGACAGGTCATCTTCAGTTTCTTTACGAGCTTGCCCTATTTGCCAATTATCTAGAAGGTCCAATTCCTGCTTCTCTGGGTCATTTGAACAACCTGACTTCATTGTATCTCCATGAGAATCAACTTTCTGGTTCTATACCTGCTTCCCTAGGCAATTTGCACAACCTGGCTTCCTTGTATCTACAAGAAAATCAACTTTCTGGCTCAATCCCACCATCTTTAGGAACCATTCCGAAAGATATTGGGAACTTGAACTTAATGGTGGATTTAGAGTTGGCGATAAATCAACTCAGTGGTTCCATTCCCGCCTCAATTGGTAACTTGAGTAACTTAGAATTCTTATTCCTTCGCGATAACCAACTCTCAGGCCCCATCCCCCAAGAGATGGGAGATCTCATGAAGTTGACTACTCTGCAACTGGATACTAACAATTTTGTTGGTTACTTGCCCCAACTTAAATATTTGCGGTGGTGTCCTATCCCTAAAAGCTTGAACAGTTGCAAGAGTTCAGTAAGAATTCGTGTTGAAGGGAACAATTTGACAGGAAATATATCTGATGTCCTTGATGCTTATCCAAATCTTCAATTTATTGACCTAAGCCACAACAACTTCTATGGTGAGGTCTCACACATCTGGGGACAATGTCTGCACTTAGCAACCCTACGGATGGCAGGAAGCAACCTTACCGGCAGCATACCGCCTGAAATTGGCAATGCAACCCAAATTCATGAGCTTGATCTTTCTTCAAATCGTTTGGTAGGGGTGATTCCAAAGGAATTTGGGAAATTGTCTTCTTTGAATCAAATTCCCCTCAAATTAAACTACTTGAATTTGAGCAAAAACAAGTTCAGCCAAGAAATTCCTTTTCAGTTCGGGAATTTAGTTCATCTTTTCCAACTAGATTTAAGTTATAACTCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

384

Amino Acids

42.65

Weight (kDa)

5.12

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 9 - 139 4.3e-11 Leucine-rich repeat region
LRR_8 PF13855 11 - 71 1.2e-09 Leucine rich repeat
LRR_4 PF12799 36 - 73 1.4e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 85 - 143 6.9e-07 Leucine rich repeat
LRR_14 PF23598 152 - 233 1.3e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 132, 1143
Acc36I ACCTGC 1 cut(s) 379
AccB7I CCANNNNNTGG 2 cut(s) 164, 616
AccII CGCG 1 cut(s) 582
AciI CCGC 4 cut(s) 83, 537, 697, 929
AcsI RAATTY 9 cut(s) 11, 566, 747, 954, 1007, 1035, 1060, 1089, 1108
AcuI CTGAAG 1 cut(s) 230
AfiI CCNNNNNNNGG 5 cut(s) 164, 452, 616, 898, 938
AjnI CCWGG 1 cut(s) 396
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 4 cut(s) 57, 262, 720, 964
AluI AGCT 4 cut(s) 57, 262, 720, 964
Alw26I GTCTC 2 cut(s) 227, 859
AoxI GGCC 1 cut(s) 598
ApeKI GCWGC 2 cut(s) 4, 921
ApoI RAATTY 9 cut(s) 11, 566, 747, 954, 1007, 1035, 1060, 1089, 1108
AspA2I CCTAGG 1 cut(s) 379
AspS9I GGNCC 3 cut(s) 187, 290, 599
AsuHPI GGTGA 2 cut(s) 860, 1006
AvaII GGWCC 2 cut(s) 187, 290
AvrII CCTAGG 1 cut(s) 379
BarI GAAGNNNNNNTAC 2 cut(s) 898, 930
BbsI GAAGAC 1 cut(s) 1014
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 933
BccI CCATC 5 cut(s) 86, 454, 610, 611, 892
BciT130I CCWGG 1 cut(s) 398
BciVI GTATCC 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 227, 859
BfaI CTAG 3 cut(s) 284, 380, 1130
BfuAI ACCTGC 1 cut(s) 379
BfuI GTATCC 1 cut(s) 646
BglII AGATCT 1 cut(s) 622
BisI GCNGC 2 cut(s) 5, 922
BlnI CCTAGG 1 cut(s) 379
BlsI GCNGC 2 cut(s) 6, 923
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 2 cut(s) 187, 290
BmgT120I GGNCC 3 cut(s) 187, 290, 599
BmiI GGNNCC 3 cut(s) 457, 529, 601
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 64, 787
BpiI GAAGAC 1 cut(s) 1014
Bpu10I CCTNAGC 2 cut(s) 53, 827
BpuEI CTTGAG 3 cut(s) 203, 213, 574
BsaBI GATNNNNATC 1 cut(s) 801
BsaI GGTCTC 1 cut(s) 859
BsaJI CCNNGG 1 cut(s) 379
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 452, 616, 898, 938
Bse118I RCCGGY 1 cut(s) 917
Bse1I ACTGG 2 cut(s) 208, 654
Bse3DI GCAATG 1 cut(s) 949
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 3 cut(s) 78, 603, 903
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 5 cut(s) 164, 452, 616, 898, 938
BseMI GCAATG 1 cut(s) 949
BseMII CTCAG 4 cut(s) 67, 101, 535, 609
BseNI ACTGG 2 cut(s) 208, 654
BseXI GCAGC 1 cut(s) 933
BsgI GTGCAG 2 cut(s) 176, 863
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 1 cut(s) 600
BsiSI CCGG 1 cut(s) 918
BslFI GGGAC 1 cut(s) 882
BslI CCNNNNNNNGG 5 cut(s) 164, 452, 616, 898, 938
BsmAI GTCTC 2 cut(s) 227, 859
BsmFI GGGAC 1 cut(s) 882
BsnI GGCC 1 cut(s) 600
Bso31I GGTCTC 1 cut(s) 859
Bsp143I GATC 3 cut(s) 64, 622, 967
Bsp68I TCGCGA 1 cut(s) 582
BspACI CCGC 4 cut(s) 83, 537, 697, 929
BspANI GGCC 1 cut(s) 600
BspCNI CTCAG 4 cut(s) 66, 100, 534, 608
BspFNI CGCG 1 cut(s) 582
BspHI TCATGA 2 cut(s) 627, 958
BspLI GGNNCC 3 cut(s) 457, 529, 601
BspMI ACCTGC 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 859
BsrDI GCAATG 1 cut(s) 949
BsrFI RCCGGY 1 cut(s) 917
BsrI ACTGG 2 cut(s) 208, 654
BssAI RCCGGY 1 cut(s) 917
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 3 cut(s) 64, 622, 967
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 7 cut(s) 53, 87, 521, 562, 595, 827, 883
BstF5I GGATG 3 cut(s) 78, 603, 903
BstFNI CGCG 1 cut(s) 582
BstKTI GATC 3 cut(s) 67, 625, 970
BstMAI GTCTC 2 cut(s) 227, 859
BstMBI GATC 3 cut(s) 64, 622, 967
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 933
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 1 cut(s) 622
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 1 cut(s) 622
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 1 cut(s) 600
BtsCI GGATG 3 cut(s) 78, 603, 903
BtsIMutI CAGTG 1 cut(s) 529
BtuMI TCGCGA 1 cut(s) 582
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 264
CciI TCATGA 2 cut(s) 627, 958
Cfr10I RCCGGY 1 cut(s) 917
Cfr13I GGNCC 3 cut(s) 187, 290, 599
CviAII CATG 4 cut(s) 8, 344, 628, 959
DdeI CTNAG 7 cut(s) 53, 87, 521, 562, 595, 827, 883
DpnI GATC 3 cut(s) 66, 624, 969
DpnII GATC 3 cut(s) 64, 622, 967
Eco130I CCWWGG 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 859
Eco47I GGWCC 2 cut(s) 187, 290
Eco57I CTGAAG 1 cut(s) 230
EcoO109I RGGNCCY 2 cut(s) 187, 599
EcoRI GAATTC 2 cut(s) 566, 747
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 4 cut(s) 11, 347, 631, 962
FaqI GGGAC 1 cut(s) 882
FatI CATG 4 cut(s) 7, 343, 627, 958
FauI CCCGC 2 cut(s) 90, 544
Fnu4HI GCNGC 2 cut(s) 5, 922
FokI GGATG 3 cut(s) 65, 590, 910
Fsp4HI GCNGC 2 cut(s) 5, 922
FspBI CTAG 3 cut(s) 284, 380, 1130
GluI GCNGC 2 cut(s) 5, 922
HaeIII GGCC 1 cut(s) 600
HapII CCGG 1 cut(s) 918
Hin1II CATG 4 cut(s) 11, 347, 631, 962
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HindIII AAGCTT 1 cut(s) 718
HinfI GANTC 3 cut(s) 349, 997, 1030
HpaII CCGG 1 cut(s) 918
HphI GGTGA 2 cut(s) 860, 1006
Hpy166II GTNNAC 2 cut(s) 155, 636
Hpy188I TCNGA 3 cut(s) 90, 465, 787
Hpy8I GTNNAC 2 cut(s) 155, 636
HpyAV CCTTC 4 cut(s) 37, 281, 587, 752
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4V TGCA 7 cut(s) 7, 193, 391, 646, 732, 880, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 7 cut(s) 53, 87, 521, 562, 595, 827, 883
Hsp92II CATG 4 cut(s) 11, 347, 631, 962
Kzo9I GATC 3 cut(s) 64, 622, 967
Lsp1109I GCAGC 1 cut(s) 933
LweI GCATC 2 cut(s) 64, 787
MaeI CTAG 3 cut(s) 284, 380, 1130
MaeIII GTNAC 3 cut(s) 548, 557, 671
MalI GATC 3 cut(s) 66, 624, 969
MboI GATC 3 cut(s) 64, 622, 967
MboII GAAGA 4 cut(s) 236, 803, 966, 1014
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 622
MmeI TCCRAC 1 cut(s) 1150
MnlI CCTC 8 cut(s) 62, 96, 110, 178, 237, 550, 844, 1052
MseI TTAA 5 cut(s) 212, 488, 687, 1049, 1136
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 1 cut(s) 918
MspR9I CCNGG 1 cut(s) 398
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 3 cut(s) 64, 622, 967
NlaIII CATG 4 cut(s) 11, 347, 631, 962
NlaIV GGNNCC 3 cut(s) 457, 529, 601
NruI TCGCGA 1 cut(s) 582
PagI TCATGA 2 cut(s) 627, 958
PfeI GAWTC 3 cut(s) 349, 997, 1030
PflFI GACNNNGTC 1 cut(s) 873
PflMI CCANNNNNTGG 2 cut(s) 164, 616
PkrI GCNGC 2 cut(s) 6, 923
PpuMI RGGWCCY 1 cut(s) 187
PsiI TTATAA 2 cut(s) 132, 1143
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 3 cut(s) 457, 529, 601
PspPI GGNCC 3 cut(s) 187, 290, 599
PspPPI RGGWCCY 1 cut(s) 187
PsuI RGATCY 1 cut(s) 622
PsyI GACNNNGTC 1 cut(s) 873
RruI TCGCGA 1 cut(s) 582
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 5 cut(s) 212, 488, 687, 1049, 1136
SatI GCNGC 2 cut(s) 5, 922
Sau3AI GATC 3 cut(s) 64, 622, 967
Sau96I GGNCC 3 cut(s) 187, 290, 599
ScrFI CCNGG 1 cut(s) 398
SfaNI GCATC 2 cut(s) 64, 787
SinI GGWCC 2 cut(s) 187, 290
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 3 cut(s) 182, 228, 553
SmoI CTYRAG 3 cut(s) 182, 228, 553
SsiI CCGC 4 cut(s) 83, 537, 697, 929
SspI AATATT 1 cut(s) 692
SspMI CTAG 3 cut(s) 284, 380, 1130
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 728
TfiI GAWTC 3 cut(s) 349, 997, 1030
Tru1I TTAA 5 cut(s) 212, 488, 687, 1049, 1136
Tru9I TTAA 5 cut(s) 212, 488, 687, 1049, 1136
TscAI CASTG 1 cut(s) 529
TseI GCWGC 2 cut(s) 4, 921
TspDTI ATGAA 7 cut(s) 6, 24, 216, 321, 644, 947, 1106
TspGWI ACGGA 1 cut(s) 910
TspRI CASTG 1 cut(s) 529
Tth111I GACNNNGTC 1 cut(s) 873
Van91I CCANNNNNTGG 2 cut(s) 164, 616
VpaK11BI GGWCC 2 cut(s) 187, 290
XapI RAATTY 9 cut(s) 11, 566, 747, 954, 1007, 1035, 1060, 1089, 1108
XbaI TCTAGA 1 cut(s) 283
XmaJI CCTAGG 1 cut(s) 379
XspI CTAG 3 cut(s) 284, 380, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.